Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 120 4e-22 >seq12 Length=3345923 Score = 120 bits (132), Expect = 4e-22 Identities = 310/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 77379 CCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAA 77438 ||||| || | || || || || || ||||||||||| |||| || || |||||| Sbjct 1219482 CCTTCAGTCGCTGCAAGCTCGCAGCTAGCTTCCAATGCAGCGTAGTATATGCATTCGAAT 1219423 Query 77439 ATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAG 77498 || |||||||| | ||| || || | |||||| || || || | | || || ||| Sbjct 1219422 ATATTCTTATTTAACACTTTGGCATCCACACTATCGAAGGGGTAGCGCATCAGCATGAAG 1219363 Query 77499 GCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTA 77558 || || || || || || || || || || || || | ||||| | | ||| | Sbjct 1219362 GCGTCGGCCAAACCTTGGACACCTATTCCTATCGGGCGATGTCGCATGTTGCTCTTCCGT 1219303 Query 77559 GCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACT 77618 || || |||||||| || | ||| |||| || || ||| ||||||| | || Sbjct 1219302 GCCTCAGGAATAGGGTAGTGATTTCTGTCGATGATGCGATTCAGATTTCGTGTCATGACC 1219243 Query 77619 TTAACCACGTCCTTTAGTTTAAGAAAATCAAAT--CTTCCATCTATA----ACAAACATG 77672 || ||||| ||| || || | ||| |||| ||| | |||| |||||| || Sbjct 1219242 TTTACCACCGACTTCAGCTTCTCATAATTAAATGACTTTCTTCTAGGCTCCACAAACTTG 1219183 Query 77673 TTCAAAGCTATA--GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTA 77730 |||| | | || || || ||||| || || || || | | | | | | | Sbjct 1219182 GG--AAGCGAAACTGACGCAAGGTTACACACAGCGACTTCGTCTCTGCCAGTAAACTCGA 1219125 Query 77731 TTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTT 77790 | ||||| ||||| || | ||||| || || |||||||| | ||||||||||| | Sbjct 1219124 CCACTTCGGTGCATAGGTTGCCGCATTTTATCGTCCCCAGATTCTTCTGGTTGCTCTTCT 1219065 Query 77791 TATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||||||| | ||| || || | ||| ||||||| || ||||| ||||| Sbjct 1219064 TATTGCAAGCGTCTTTGTACATCATATACGGAGTGCCTGTTTCTATCTG 1219016 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 || || ||||||| ||| |||| |||||| ||||| || || | |||||||||||| || Sbjct 1181676 ATTTCTGTACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTA 1181735 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||||| | |||||| || | || |||| ||||| || || ||||| Sbjct 1181736 TTGCAGGCGTCCTTGTACATCATGTACGGCGTCCCTGTCTCGATCTG 1181782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661236793440