Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq7 134 3e-26 >seq1 Length=11360811 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| || || || || ||||||||||| |||| | |||||| || ||||| Sbjct 4842085 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4842144 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| ||||||||||| |||||||||||||| | | ||| || ||||| |||||| Sbjct 4842145 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4842204 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| || ||| | || | |||| ||| ||| ||||| || || || || || Sbjct 4842205 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4842264 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||| | |||||| Sbjct 4842265 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||||||||| || || |||||||| || | || ||||| |||||||| || Sbjct 3942875 ATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTG 3942816 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || ||||| |||||||| ||||| | | ||| ||||| || ||||||||||| Sbjct 3942815 TTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTT 3942756 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| |||| | | || || ||||||||| || || || ||||| || || Sbjct 3942755 AGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGT 3942696 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| Sbjct 3942695 AAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 5/142 (4%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||| || ||||||||||||| || ||||| || || || | Sbjct 3942422 CAAG-TGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCCTCCA 3942364 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || || || ||||| | || ||||| | || || |||||||| || || Sbjct 3942363 GTTGCTTT--CCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCCTG 3942306 Query 152015 AATTTTTTGTTTGACAGTCTCT 152036 ||||||| ||| || ||||| Sbjct 3942305 AATTTTTGCTTTCACGTTCTCT 3942284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807923720441