Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq7 114 3e-20 >seq1 Length=11360811 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||| ||||| | ||| ||| || |||||||||||||| | || || | ||| || || Sbjct 4842084 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4842143 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 |||||||| ||||| ||||| | | || ||||| || || |||||||||||||| Sbjct 4842144 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4842203 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||||| || || | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 4842204 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTT 4842263 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||| ||||| |||||||| Sbjct 4842264 CCCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || | |||| || | || ||| || || ||||||||||||| Sbjct 3942670 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 3942611 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || | ||||| || ||||| || || || ||||||||||| || || ||| ||| Sbjct 3942610 AATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGA 3942551 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| || || | || ||| | || | || ||||| | || || Sbjct 3942550 ATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACC 3942491 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || |||||||| || || | || || ||||| ||||||||| Sbjct 3942490 TCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||| |||||||||| || | || |||||| || |||||||| || | Sbjct 3942442 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 3942383 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| | || ||||| ||||| || || ||||| || | |||||||||||| |||| Sbjct 3942382 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 3942323 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 ||||| |||||||| || || |||||||| ||| Sbjct 3942322 ATACCTTCCTTGTCCTGAATTTTTGCTTTCACG 3942290 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | || || | |||||| || || |||||||| |||||| Sbjct 3942862 TCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAG 3942803 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | ||||||||| || || || || || ||||| || || || || || | Sbjct 3942802 ATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTC 3942743 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || || | || ||||| || ||||| || || || || | || || || Sbjct 3942742 TCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACA 3942683 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 3942682 AAAATTTGCAT 3942672 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||| ||||| || ||||| || |||||||||||||| || || || ||| | ||||| Sbjct 3940740 ACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGAT 3940681 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || || || | || || || | |||||| ||||| || |||| || || ||||| || Sbjct 3940680 CGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGAT 3940621 Query 283094 CTGCATTTT 283102 ||||||||| Sbjct 3940620 CTGCATTTT 3940612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727518717634