Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq7 141 2e-28 >seq1 Length=11360811 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || |||||||| || || |||||||| || || || || ||| Sbjct 4842290 CAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCCGAC 4842231 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| ||||| || || ||||| || |||||||| Sbjct 4842230 ACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAGCAG 4842171 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||||||||| ||||| || ||||| || || ||||| |||| || ||| || Sbjct 4842170 AGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAACATC 4842111 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 4842110 CAGAAGGAATCCACCCTTCATCTCGT 4842085 >seq7 Length=4216856 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || ||||||||||| ||||| || || || || || || Sbjct 3942675 CAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCTGAT 3942734 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || ||||| || |||||||| |||||||| ||||| || Sbjct 3942735 ACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAACAG 3942794 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| || || || | || || ||| | Sbjct 3942795 AGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAACATT 3942854 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || || ||| | || |||||| Sbjct 3942855 CAGAAGGAGTCTACTCTTCATTTGGTGTTGAGA 3942887 Score = 118 bits (130), Expect = 3e-21 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || ||||| || || |||||||| || || Sbjct 3942447 CAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCGGAT 3942506 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || | |||||||| || || ||| || || ||||||||||| || || || || ||||| Sbjct 3942507 ACGGTAGAGAACGTGAAGACGAAA-ATACAAGACAAAGAAGGGATTCCACCTGATCAGCA 3942565 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | |||||||| ||||| || || || |||||||| || | | || || ||| | Sbjct 3942566 GCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAACAT 3942625 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 3942626 TCAGAAGGAATCGACCCTTCA-CTTG 3942650 Score = 113 bits (124), Expect = 1e-19 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 |||||||| ||| ||| ||||||||||| ||||| || || || ||||| ||||| ||| Sbjct 3942285 GAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTT 3942344 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 || || || ||||| || || || || ||||| || | ||||||| ||| | || ||| Sbjct 3942345 ATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAA 3942404 Query 178110 GAATCAACACTGCATCTTG 178128 ||||||||||| || |||| Sbjct 3942405 GAATCAACACTTCA-CTTG 3942422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717766735974