Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq7 98.7 9e-16 >seq1 Length=11360811 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||| ||||| ||||||||||| || | |||| || Sbjct 4842085 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4842144 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || ||||||||||| || || | ||| ||||| | ||| | | |||||||| | || Sbjct 4842145 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGT-CTTG 4842203 Query 41774 ATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | |||| ||||| | ||||||| | ||| || |||| || || || || Sbjct 4842204 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTT 4842263 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| |||||||||||||| Sbjct 4842264 CCCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || |||||||||| || || || |||||||||||||| ||||| || Sbjct 3942670 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 3942611 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || || ||||| || ||||| |||| ||||| || || | ||| Sbjct 3942610 AATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGA 3942551 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || ||||| ||||| ||||| | || || || || ||||||| Sbjct 3942550 ATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACC 3942491 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||| || || || || || || |||||||||||||| Sbjct 3942490 TCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298966665200