Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq50 116 3e-21 >seq50 Length=657131 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || || |||||||| || ||| || || | Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| ||||||||||| | || || ||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| || ||||| ||||||||| || ||| | | || ||||| Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||||||||| ||||||| |||||||||| || Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 305908 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | |||||| |||| || || || || || || ||| || Sbjct 306822 AAAAATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCC 306763 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || ||| | | | | ||| ||||| || || ||||| | || || Sbjct 306762 CTCCGATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGA 306703 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||| | || ||||| || ||||| || ||||||||| || ||| || ||||||| Sbjct 306702 TCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTA 306643 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || |||||||||||||| |||||| |||| | || ||||| || || Sbjct 306642 CAACATCCAGAAGGAATCTACGCTTCACCTGGTCCTTCGTTTACGGGGTGG 306592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| | || ||||| || ||||| || ||| || | Sbjct 306363 AATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTC 306304 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||||| | | | ||| ||||| || |||||||| | || ||||| Sbjct 306303 GGATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCA 306244 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | ||||| || || || |||||||| ||| | ||| | | || ||||| Sbjct 306243 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAA 306184 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||||||||| || |||||| ||||||||||| | || || ||| Sbjct 306183 CATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGGG 306135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428321059372610