Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq50 102 8e-17 >seq1 Length=9216672 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || || || Sbjct 4066369 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4066310 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| |||| ||||| ||||| |||||| | |||||| Sbjct 4066309 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4066250 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| ||| |||||||| ||||| |||| | || ||| |||||||||| Sbjct 4066249 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4066190 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || ||||| || Sbjct 4066189 ATCCAGAAGGAATCCACCCTTCATCTCGT 4066161 >seq50 Length=657131 Score = 102 bits (112), Expect = 8e-17 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||||||||| | || || || | | Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| || ||||| |||||||| | ||||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || ||||||||||| || | | || || ||||||||| Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT--GAGGGGCGGCGGCTT 40922 || ||||||||| | || || ||| | |||||| | || |||| | ||||||| Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGTGCGGCTT 305900 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| ||||| || || || || || ||||| | || || || | Sbjct 306822 AAAAATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCC 306763 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | | ||||| | |||| ||||| | ||||| || || || || | | Sbjct 306762 CTCCGATACGATCGAAAACG-TGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCG 306704 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || || || || |||| ||| ||||| |||||||| || | | || | ||| | Sbjct 306703 ATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATT 306644 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | ||||| || || || | || || |||| ||| Sbjct 306643 ACAACATCCAGAAGGAATCTACGCTTCACCTGGTCCTTCGTTTACGGGGTGGC 306591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200768033120