Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq54 125 6e-24 seq50 125 6e-24 seq1 122 8e-23 >seq54 Length=544971 Score = 125 bits (138), Expect = 6e-24 Identities = 119/151 (79%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 |||| ||||| || ||||| || || ||| | |||||| |||||||| ||||||| || Sbjct 190733 CAAG-TTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTACATAAAT 190791 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 |||||| || || ||||| | || |||||||||| |||| |||||| | ||||||| Sbjct 190792 TGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGT 190851 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 | | |||||||||||| || ||||||| ||| Sbjct 190852 ACATCATGTACGGCGTCCCTGTCTCGATCTG 190882 >seq50 Length=657131 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| || || ||||| || || || ||||| | || || || Sbjct 306824 TCAAAAATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAG 306765 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||| | |||||| || || || ||| ||||||||||| | || ||| Sbjct 306764 CCCTCCGATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCC 306705 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || || |||||||| || ||||||||||| ||| ||||||| | || || |||| Sbjct 306704 GATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGAT 306645 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| || || ||||| || ||||| ||||| ||| Sbjct 306644 TACAACATCCAGAAGGAATCTACGCTTCACCTGGTCCTT 306606 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| |||| || || ||||| || | || || || ||||| Sbjct 306591 CATGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTC 306532 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| | ||| |||||||||||| | ||||| ||||| Sbjct 306531 GGACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCA 306472 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || || || || || |||| ||| | || || |||||| || Sbjct 306471 ACAACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAA 306412 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| |||||||| || ||||| |||||||| || || | || || Sbjct 306411 CATTCAGAAAGAATCAACACTTCACTTGGTACTTCGATTGCGTGGAGG 306364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || ||||| ||||| ||||| | || || || ||||| Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| || || |||||| | || || ||||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| ||||||| | || | || || ||| Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || ||||||||| |||| Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGT 305926 >seq1 Length=9216672 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || ||||| || || |||||| | || ||||| | ||| Sbjct 4066369 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4066310 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || || ||| | | ||||||| || | || |||||||| Sbjct 4066309 GACACTATTGAAAATGTGAAGGCAAAGATTCAAG-ACAAGGAGGGGATCCCCCCCGACCA 4066251 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| |||||||| |||||||| | ||| | ||| || || Sbjct 4066250 GCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAA 4066191 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||| || || ||||| || |||||||| ||| Sbjct 4066190 CATCCAGAAGGAATCCACCCTTCATCTCGTA 4066160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750452707040