Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq50 170 4e-37 seq1 149 1e-30 >seq50 Length=657131 Score = 170 bits (188), Expect = 4e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || ||||| ||||| ||||| || ||||| || ||||| || Sbjct 305938 GTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGTTTCCCT 305997 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||||||||| |||||||| || ||||||||||| ||||| || || || Sbjct 305998 GCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTTAGCCTTC 306057 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || ||||| |||||||| || || || || ||||| ||| Sbjct 306058 ACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTT 306117 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 306118 TTCACAAAAATTTGCAT 306134 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | |||||||| ||||| || || || || || | ||||| || || Sbjct 306606 AAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATC 306665 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| || || || | ||||||||| || || || ||||| || || Sbjct 306666 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTC 306725 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || || || || ||||| | |||||| || || ||||| | || ||||| Sbjct 306726 TTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGT 306785 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| ||||| |||||||| || || ||||||||||| Sbjct 306786 CTTCCCAGTCAGTGTTTTCACGAAGATCTGCATTTT 306821 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | ||| |||||||||||||| || || || || | ||||| ||||| Sbjct 306378 AAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTC 306437 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| ||||| |||||||| || | ||||| || || || || ||||| || || Sbjct 306438 CTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTC 306497 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| |||||||| || || |||| || || || || || || | || || || Sbjct 306498 CTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAACGTTATCGT 306557 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || || || || ||||| Sbjct 306558 CTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 >seq1 Length=9216672 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | || ||||| ||||| || || ||||| || |||||||| |||||||| Sbjct 4066160 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4066219 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||| || || || || |||||||| || || || || || || || || || || Sbjct 4066220 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4066279 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||||||| || |||||||| | || ||| || || || || || || || ||||| Sbjct 4066280 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTT 4066339 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 || || || || || || || |||||||| || ||||| Sbjct 4066340 CCCTGTGAGGGTCTTGACGAAAATCTGCATCGTGGGTACA 4066379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151356178940296