Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq50 138 1e-27 >seq50 Length=657131 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| |||| ||||||||| || | |||||| ||||| || | ||| || || Sbjct 305908 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCG-- 305965 Query 94841 ATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||||||| | ||| ||||||||||| || ||||||| | || || || || |||| Sbjct 305966 ATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAG 306025 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || |||||||| || | |||||| ||||| || ||| || |||| | || | Sbjct 306026 GGATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTA 306085 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||||||||| ||||| ||||||||||| || ||||| Sbjct 306086 CTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 114 bits (126), Expect = 1e-20 Identities = 180/254 (71%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 94756 TAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAG 94814 ||| |||||| |||| ||| || || || | || ||| ||||||||||| | || | Sbjct 306110 TAAGGGTTTTCACAAAAATTTGCATCCCGCCACGCAGTCGTAACACCAAGTGAAGGGTCG 306169 Query 94815 ATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCA 94873 ||||||| || | ||| || || | | || | || | || ||||| || ||||| | Sbjct 306170 ATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA-TCATCCAGTTGCTTTCCAGCG 306228 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| || | |||||||| || ||||| ||||||||||| | ||||| | ||| ||| Sbjct 306229 AAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGTATTTTCGTCTTCACG 306288 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | || || || | | || || || | ||| || || || ||||| || |||||| Sbjct 306289 TTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTC 306348 Query 94994 ACAAAGATCTGCAT 95007 || || |||||||| Sbjct 306349 ACGAAAATCTGCAT 306362 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||||||||||| || | ||| |||||| || || || ||| ||| Sbjct 306610 ACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCTTCC 306669 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | || ||||| || ||||| ||||| ||||| | Sbjct 306670 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGG 306729 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| ||| ||| || || | | | || || || | ||||| || || Sbjct 306730 ATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTC 306789 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || |||||||| ||||||||||| Sbjct 306790 CCAGTCAGTGTTTTCACGAAGATCTGCAT 306818 Score = 105 bits (116), Expect = 6e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | |||||| | |||||||| | || ||||| || || | | Sbjct 306352 AAAATCTGCATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATG 306411 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| || || | |||||||| || ||||| |||| || | | ||| Sbjct 306412 TTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGT 306471 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||||||||| ||||| | ||||||||| || ||| | | ||||| Sbjct 306472 TGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCC 306531 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | ||| || || || || || | || ||||| || || |||||| Sbjct 306532 GACGGCTCCACTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCATG 306591 Query 95009 C 95009 | Sbjct 306592 C 306592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275162382320