Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq54 105 2e-17 >seq54 Length=544971 Score = 105 bits (116), Expect = 2e-17 Identities = 210/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 364009 TGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 || ||| | || ||||| ||| | | || || ||||||||||| | ||| ||||| Sbjct 227763 TGTCCAAATGAGTGTCCGGGTTTGACGGAGGTCTGGGGTGACGATTTCAAGGCTTTATAC 227822 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || || || ||| ||| ||| | | || ||||| || || ||| | || |||||| Sbjct 227823 GAGAAATACGAAATGGAAGGACGTGGCAGGAAAACAATACCTGCTCAGTACCTGTGGTTT 227882 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 || || || | | ||||| || ||||| || || |||||| |||||||||| | ||| Sbjct 227883 GCGATATTGCAAGCTCAGATAGAAACAGGCACTCCGTATATGATGTACAAAGACGCTTGC 227942 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 || ||| ||||||| || | || || || || | |||||||||| ||||| Sbjct 227943 AATAAGAAGAGCAACCAGAAGAATCTGGGGACGATAAAATGCGGCAACCTATGCACCGAA 228002 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 | | || | || | ||||| || || |||||||||||||| | ||||| Sbjct 228003 GTGGTCGAGTTTACTGGCAGAGACGAAGTCGCTGTGTGTAACCTTGCGTCAGTTTCGCTT 228062 Query 364309 CCGGCGTTTGT 364319 || |||||| Sbjct 228063 CCCAAGTTTGT 228073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303305806838084