Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq50 120 3e-22 >seq50 Length=657131 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 || || |||| || | ||| || || | |||||| ||||| ||||||||||| || | | Sbjct 306136 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 306195 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| | | | || || || ||||| || ||| |||| ||||||||||| || || || Sbjct 306196 AATGTTCTTCCA-TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGG 306254 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| | | ||| || ||||| | | ||| | Sbjct 306255 AATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCAC 306314 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || ||||| ||||| |||||||||||||| Sbjct 306315 CTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || ||||| || || | || | || || ||||| || |||||||||||| Sbjct 306591 GCCACCCCGTAAACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGA 306650 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || || | || | || || ||||||||||| ||| |||| | |||||| || || || | Sbjct 306651 CAACGTTCTGCCA-TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTG 306709 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||||||| ||| | | || | ||||||| || ||| | Sbjct 306710 GAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCA 306769 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || ||||| ||||| |||||||| Sbjct 306770 CCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTGCAT 306818 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || || | || ||| ||||| | || |||||||| ||||||||||| | || | Sbjct 305908 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 305967 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || | || | || || ||||| || ||||| |||| | | ||| ||||| ||||| Sbjct 305968 AGTGTTCTGCCA-TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 306026 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| |||||||| || ||||| ||| | | ||| | ||||| | | ||| | Sbjct 306027 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 306086 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| || ||||| ||||| Sbjct 306087 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| || || || || || | || || || || ||||||||||||||| | Sbjct 306364 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 306423 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| || ||||| ||||| | || | ||| || ||||| || || Sbjct 306424 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 306483 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| ||| || | | ||| | || || | | ||| | Sbjct 306484 ATACCTTCCTTGTC-CTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCAC 306542 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| | || || |||||||| |||||| Sbjct 306543 TTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCATG 306591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995913742080