Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq50 116 3e-21 seq1 116 3e-21 >seq50 Length=657131 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||||| |||| |||| ||| || || |||||||| || ||||||||||| | Sbjct 305908 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 305967 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || |||| ||||| || ||| | || |||| ||||||||| ||| Sbjct 305968 AGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGG 306027 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| ||||| || ||||| |||||| | | | || || ||||| | Sbjct 306028 ATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACT 306087 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||||| || || ||||| |||||||| ||||| Sbjct 306088 TCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || ||||| || ||||| || |||||||| |||| || ||| || | || Sbjct 306607 AGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCT 306666 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| || | || || |||||||| || || | || || ||||| Sbjct 306667 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCT 306726 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | |||||| | | | || ||| ||||||| |||| ||||| || Sbjct 306727 TGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTC 306786 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| ||||| || || ||||||||||| Sbjct 306787 TTCCCAGTCAGTGTTTTCACGAAGATCTGCATTTT 306821 >seq1 Length=9216672 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||| | ||| || ||||| ||||| || ||||||||||||| | ||| || |||| || Sbjct 4066160 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4066219 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGC 16845 || ||||||||| || | || |||| ||| ||||| || | ||||| ||||| Sbjct 4066220 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4066279 Query 16846 AA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || ||||| |||||| | | | ||||||| | ||| ||||| ||||||||| Sbjct 4066280 AATCTTTGC--CTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTC 4066337 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||| ||||||||||| Sbjct 4066338 TTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 4066369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073870277380