Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq50 127 2e-24 seq1 105 6e-18 seq32 91.5 1e-13 >seq50 Length=657131 Score = 127 bits (140), Expect = 2e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| |||||||| | ||||| ||| ||||| Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| | |||| ||| || |||||||| || || |||||||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAA-GATAAAGAAGGCATCCCTCCTGACCA 306016 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG--ATCGCACTGTGGGCGATTAC 25175 |||| || | || ||||| || ||||| | ||||||| | |||| | | || ||| Sbjct 306015 ACAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCG--GACTAC 305958 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || ||||| ||| | || || |||| || Sbjct 305957 AACATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 305908 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || || || |||| || || | ||||| | || |||||| | Sbjct 306822 AAAAATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCC 306763 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || ||||| ||||| |||||| ||||| |||||||||||||| || Sbjct 306762 CTCCGATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGA 306703 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || || || ||||| || | ||||||| | || || |||||| Sbjct 306702 TCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTA 306643 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || ||||| ||||| || Sbjct 306642 CAACATCCAGAAGGAATCTACGCTTCA 306616 >seq1 Length=9216672 Score = 105 bits (116), Expect = 6e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| | || || || ||||||| | ||||| ||| | Sbjct 4066372 ACGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCT 4066313 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| || ||||| |||| | ||| ||||| || ||||| || || || Sbjct 4066312 TCCGACACTATTGAAAATGTGAAGGCAAAGATTCAA-GACAAGGAGGGGATCCCCCCCGA 4066254 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || |||||||||||| | ||||| | | ||| | ||| || Sbjct 4066253 CCAGCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTA 4066194 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT--GCTAAG 25213 ||| || || || |||||||| || ||| | || |||||| Sbjct 4066193 CAACATCCAGAAGGAATCCACCCTTCATCTCGTAAGCTAAG 4066153 >seq32 Length=1241728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 181/262 (69%), Gaps = 16/262 (6%) Strand=Plus/Plus Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042 || || ||||| | | || || ||||||||||||||||| | | ||| | || Sbjct 911615 ACATTGAACTTCCTTTGGCAACCAGCGTAGTTCATATACCTAACCTTCCCATATATGGGT 911674 Query 51043 CGTTCTTTGAACGGCCTGTCGTGCACA-CCGCAAATTGACCACATACAACCCACATAATT 51101 | ||| |||| ||| |||||||| | |||| || |||||||| || || || ||| Sbjct 911675 CTCTCTCTGAAAGGCTGGTCGTGCAGAGCCGC-GATCGACCACATGCATCCGACGTAACC 911733 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAA-TG 51160 ||| ||||| || |||| |||||| | ||| || | | ||| || | | ||| || Sbjct 911734 GTTGGGATCCGTCCCGTCCAGGCTGTATTTATCATTCAAATGTATAGC-TCCCGCAAGTG 911792 Query 51161 CCATGTCTGCACTAGGCG------TCCATTCCATAATTTTCTTGGCCCAGTACATGCGCA 51214 || || || ||||| |||| |||| || ||||| ||||||||||| |||| Sbjct 911793 CC---TCAGC---AGGCGATTTCATCCACTCCAGCATCTTCTTCGCCCAGTACATACGCA 911846 Query 51215 TGTAACCGTGCATCTTGCCCTC 51236 || ||||||||||| || || Sbjct 911847 GATAGCCGTGCATCTTTCCTTC 911868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433312885248530