Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq50 140 3e-28 seq1 104 2e-17 seq54 95.1 1e-14 >seq50 Length=657131 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || ||||| || ||| | || | |||||||| | | Sbjct 306590 ATGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCG 306531 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||||||||| |||||||| |||||||| || || ||| Sbjct 306530 GACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAA 306471 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | ||||| | || | |||||||||||| Sbjct 306470 CAACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAAC 306411 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||||| || | || || || | |||||||| ||||| Sbjct 306410 ATTCAGAAAGAATCAACACTTCACTTGGTACTTCGATTGCGTGGAGG 306364 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| | || || || || ||||| | || ||||| | Sbjct 306822 AAAAATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCC 306763 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||||| | || | | || ||||| ||||||||||| || ||||||||||| Sbjct 306762 CTCCGATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGA 306703 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| ||||| || || || ||||| ||| | || ||| | | || | |||||||| Sbjct 306702 TCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTA 306643 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || ||||| || Sbjct 306642 CAACATCCAGAAGGAATCTAC 306622 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | || || ||||| |||| || ||||| || | | Sbjct 306135 GATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTC 306076 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || ||||||||||| || || || || || || || || Sbjct 306075 TGATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCA 306016 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || |||||| | || ||| | | || | || || ||||| Sbjct 306015 ACAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAA 305956 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || || || || | ||||| || ||| |||| || || ||| Sbjct 305955 CATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGT 305907 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| |||| || || ||| | || || || ||||| | | Sbjct 306362 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 306303 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || | | || ||||| |||||||| || || |||||||| ||||| Sbjct 306302 GATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCAG 306243 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | || ||| | || | || || |||||| Sbjct 306242 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAAC 306183 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| ||| | || || || || ||| |||| || || Sbjct 306182 ATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGG 306136 >seq1 Length=9216672 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | || || || || |||| || ||||| || | | Sbjct 4066370 GATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTC 4066311 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || ||| ||||||||||||||||| || || ||||| || Sbjct 4066310 CGACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCA 4066251 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||||||||| | || || | | || ||||||| ||||| Sbjct 4066250 GCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAA 4066191 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| || || ||||||||| | ||| Sbjct 4066190 CATCCAGAAGGAATCCACCCTTCAT 4066166 >seq54 Length=544971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 129700 GAGGCCAAATTGCAGACGGC-ACTT--TCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || ||||| |||||||| || |||| || || || | |||||| |||||||| | Sbjct 190728 GACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGC---GTACTCAACAATTTCTGTA 190784 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || ||||| ||| ||| |||||||| | | ||| || || || || | ||||| || Sbjct 190785 CATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCG 190844 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGA 129850 || |||||||||||||||||||| || || |||| Sbjct 190845 TCCTTGTACATCATGTACGGCGTCCCTGTCTCGA 190878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 129723 TTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCC 129782 ||||| | || || | ||||||| | ||||| ||| | || | ||| || || || Sbjct 228029 TTCGTCTCTGCCAGTAAACTCGACCACTTCGGTGCATAGGTTGCCGCATTTTATCGTCCC 227970 Query 129783 CAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCC 129842 || || ||| || || || ||| | |||||||| |||||||||||||| ||||| ||||| Sbjct 227969 CAGATTCTTCTGGTTGCTCTTCTTATTGCAAGCGTCTTTGTACATCATATACGGAGTGCC 227910 Query 129843 CGTTTC 129848 ||||| Sbjct 227909 TGTTTC 227904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713359625030