Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 178 2e-39 seq50 158 2e-33 seq37 86.0 1e-11 seq12 86.0 1e-11 >seq1 Length=9216672 Score = 178 bits (196), Expect = 2e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| || || |||||||| || |||||||| || || || ||||| | || Sbjct 4066167 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTGT 4066226 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| ||||| || || |||||||| || || || |||||||||||||||||| Sbjct 4066227 TTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTTT 4066286 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || || || ||||| | | || ||||||| ||||||||| || || ||| Sbjct 4066287 GCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGTG 4066346 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| |||||||| Sbjct 4066347 AGGGTCTTGACGAAAATCTGCAT 4066369 >seq50 Length=657131 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| ||||| || || || |||||||| |||||||| | || || |||||||| Sbjct 306610 ACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCTTCC 306669 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || | ||||| ||||||||||| |||||||||||||| Sbjct 306670 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGG 306729 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||| ||| ||||| || || | | || || ||||| ||||| || || Sbjct 306730 ATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTC 306789 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || || ||||| ||||||||| Sbjct 306790 CCAGTCAGTGTTTTCACGAAGATCTGCATT 306819 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || || ||||| || || ||||| || || || ||||| || ||||| Sbjct 305922 CAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATC 305981 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | ||| ||||| || || || || || |||||||| || || |||||||| || || Sbjct 305982 TTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC 306041 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || ||||| || |||||| || || | | |||||||| | |||||||| Sbjct 306042 TTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGT 306101 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||| || || || || ||||| Sbjct 306102 TTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || | || | ||||||||| || || || ||||| || ||||| ||||||| Sbjct 306362 TTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGG 306421 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || || || || || | ||||| || || || || || | ||||||||| || | Sbjct 306422 ACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCG 306481 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| ||||| ||||| || ||| ||| || ||||| | | || | Sbjct 306482 GAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCA 306541 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || || || || || || | ||||| ||||| || ||||| Sbjct 306542 CTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 >seq37 Length=1010884 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 868186 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 868127 Query 84517 CC 84518 || Sbjct 868126 CC 868125 >seq12 Length=3349168 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 3002615 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 3002674 Query 84517 CC 84518 || Sbjct 3002675 CC 3002676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589428958640