Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq50 100 2e-16 seq1 95.1 1e-14 >seq50 Length=657131 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||||||||| || || |||||||||||| || || | |||||| || || || || Sbjct 306621 CGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCTTCCAGCTGCTTGCC 306680 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||| ||||||||||| || || ||||| ||||| ||||| || || || Sbjct 306681 AGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTT 306740 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | ||| | || |||| || || || |||| || | || || || ||||| || Sbjct 306741 CACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGT 306800 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || || |||||||| Sbjct 306801 TTTCACGAAGATCTGCAT 306818 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || |||||||| |||| || || || || | || ||||| || ||||||||||| || Sbjct 306133 ATCCCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCA 306192 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || | ||| || ||||| || |||||| |||| | |||||| || || || Sbjct 306193 GATAAT-GTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGG 306251 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATT 114330 ||||| ||||||||||| || ||| || || | | || || || || | | | Sbjct 306252 TGGAATCCCTTCTTTGTCTTGTAT-TTTCGTCTTCACGTTCTCTACCGTATCCGACGGCT 306310 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | ||| ||||| || || ||||| || ||||||||||| Sbjct 306311 CCACCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | || | || || || | || |||||||| ||||||||||||||| Sbjct 306361 ATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCG 306420 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | || || ||||| || || || | || ||||| |||||||| || Sbjct 306421 GACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGC 306480 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| ||| ||| | | || | ||||| | | || Sbjct 306481 GGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCC 306540 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||| || ||||||| || || || ||||| |||||| Sbjct 306541 ACTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCATG 306591 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || |||| |||||| || ||||| | ||||| || || ||||||||||| || Sbjct 305907 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 305966 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || | |||||| || ||||| || || |||| || | ||||||||| ||||| Sbjct 305967 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 306026 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||||| || ||| || || | | || | || || | | || || Sbjct 306027 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 306086 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 306087 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 >seq1 Length=9216672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | ||| | ||||| |||||||| || Sbjct 4066173 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTGTTTGCCG 4066232 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| ||||| || || || || || ||||| ||||||| || Sbjct 4066233 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTTTGCCTTC 4066292 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||||| | || || |||| ||| | || || || || || || Sbjct 4066293 ACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGTGAGGGTC 4066352 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 4066353 TTGACGAAAATCTGCAT 4066369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119745449544