Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq50 132 5e-26 seq1 107 2e-18 seq54 84.2 2e-11 >seq50 Length=657131 Score = 132 bits (146), Expect = 5e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||||| ||| || | |||| || |||||||| |||||||||||||| | Sbjct 306364 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 306423 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | |||| || || ||||| || ||| |||| || || || ||||| || ||| Sbjct 306424 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 306483 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTAT-CACCGGCGTCCA 64394 || ||||| || || || | |||||||||| || ||| | || | | |||| |||| Sbjct 306484 ATACCTTCCTTGTCCTG-AATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGC-TCCA 306541 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | |||| ||||| |||||||| || || |||||||||||||| Sbjct 306542 CTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| | ||| | ||||| || || || || ||||||||||| || | Sbjct 305907 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 305966 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| ||||| || || ||| | || |||| ||| ||||| ||||| Sbjct 305967 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 306026 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCA 64394 || |||||||| ||||| ||||| ||| ||| ||| | |||||| |||| || | Sbjct 306027 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGC-TCTA 306085 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || || || | ||||| || ||||||||||| Sbjct 306086 CTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG-C 64275 || || || || | ||| || || |||| ||| ||||| || || ||||||||||| | | Sbjct 306592 CCACCCCGTAAACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGAC 306651 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 ||| | || | ||||| ||||||||||| || | || || ||||| || ||||| || Sbjct 306652 AACGTTCTGC-CATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGG 306710 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||| ||| || || | ||||| || ||||| Sbjct 306711 AATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCAC 306770 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||| || |||| ||||| ||||| || |||||||| Sbjct 306771 CTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTGCATTTT 306821 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| || | ||| | |||| |||||||| || ||||||||||| || | Sbjct 306136 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 306195 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || || || ||||| || || | || | |||||||| || || ||| Sbjct 306196 AATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGA 306255 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || |||||||| ||||||||||| ||| || ||| || |||| | |||| ||||| Sbjct 306256 ATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGC-TCCAC 306314 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || | |||||||| || | ||||| |||||||| |||||| Sbjct 306315 CTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 >seq1 Length=9216672 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || ||||| || || |||||||| || | || || | ||||||| Sbjct 4066161 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4066220 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || |||||||| | ||||||| |||||||||||| || || || || || ||||| Sbjct 4066221 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4066280 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| ||| || | || || || || ||||| | || | |||||| Sbjct 4066281 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4066340 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || |||||||| ||||| Sbjct 4066341 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4066369 >seq54 Length=544971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 154582 ACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTG 154641 ||| ||||||||||||||| || || | ||| || || ||| | |||||||||| Sbjct 190723 ACAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTG 190782 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 || ||||| || | | |||||||| ||||| ||||| || || | ||||| | Sbjct 190783 TACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGG 190842 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||| ||||||| |||||||| || || || || Sbjct 190843 CGTCCTTGTACATCATGTACGGCGTCCCTGTCTC 190876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499626925207280