Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq50 104 2e-17 >seq50 Length=657131 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || || || | |||| || || ||||||||||| ||| | Sbjct 306364 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 306423 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| ||||| || || | | | || ||||| |||||||| || || Sbjct 306424 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 306483 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||||| ||| | | || | ||||| | || |||||| Sbjct 306484 ATACCTTCCTTGTC-CTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCAC 306542 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || || ||||| |||||| Sbjct 306543 TTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCATG 306591 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| |||| || || || || || | | | || ||||| |||||||||||||| | | Sbjct 306136 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 306195 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || | | | || || ||||| || || | |||| | |||||| || || || || Sbjct 306196 AATGTTCTTCCA-TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGG 306254 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| || |||| || || | | || || || || | || ||||| Sbjct 306255 AATCCCTTCTTTGTC-TTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCA 306313 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | ||| | ||| || ||||| || ||||| || ||||||||||| Sbjct 306314 CCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/237 (71%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 138380 AGCCGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGT 138439 ||||||| || ||||| || | ||| || ||||| | | |||||||| |||||||||| Sbjct 305901 AGCCGCA-CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGT 305959 Query 138440 AGT-CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGG 138498 ||| || | | | || | || || || ||||| || | | |||| || | ||||||| Sbjct 305960 AGTCCGATAGTGTTCTGCCA-TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGG 306018 Query 138499 TCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGT 138557 || ||||| || |||||||| || ||| |||| | || | | || | || || | Sbjct 306019 TCAGGAGGGATGCCTTCTTTATC-TTGAATTTTAGCCTTCACATTCTCGATCGTATCAGA 306077 Query 138558 CGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||| || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 306078 CGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || |||||||| ||| || || | || | || || || || || || | Sbjct 306625 GATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCA-TCTTCCAGCTGCTTGCCAGC 306683 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| ||||||||||| || || || || ||||| ||||| |||||| || | Sbjct 306684 GAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCAC 306743 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || |||| | ||||||||| | || | || || |||||||| ||||| Sbjct 306744 GTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTT 306803 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 306804 CACGAAGATCTGCAT 306818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244646212640