Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq50 116 3e-21 >seq50 Length=657131 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| ||||| || || |||||||| ||||| || || || |||||||| || Sbjct 305908 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 305967 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||||| || || | |||| | ||||||||| || Sbjct 305968 AGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGG 306027 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| || ||| | || || ||||| ||||| Sbjct 306028 ATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACT 306087 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || |||||||| ||||| || ||||| |||||||||||||| Sbjct 306088 TCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 116 bits (128), Expect = 3e-21 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || || | | || | ||||| ||||| || || || |||||||||||| Sbjct 306590 TGCCACCCCGTAAACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCG- 306648 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || |||| | ||||| | || ||||||||| | |||| ||||||||| ||| Sbjct 306649 -GACAACGTTCTGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGG 306707 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| ||||||||||| ||||| || || |||| || |||||| || Sbjct 306708 TGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTC 306767 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || || || || || || || || ||||| ||||| || || || ||||| ||||| Sbjct 306768 CACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTGCATTTTTGA 306824 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| || ||| || || |||||||| || || || || |||||||| || | Sbjct 306136 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCA--G 306193 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || || | ||| || |||||| | ||||||||||| || || || Sbjct 306194 ATAATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTG 306253 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| ||||| | || || | |||| ||||| || | Sbjct 306254 GAATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCA 306313 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 306314 CCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||||| | || || ||||| || || ||||| || |||||||||||| | Sbjct 306364 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCG--G 306421 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| |||| || | ||| || || || | || | ||| |||||||| | Sbjct 306422 ACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCG 306481 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| ||| || | ||||| || || || | Sbjct 306482 GAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCA 306541 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || || || |||| || || || ||||||||||| Sbjct 306542 CTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357379533943670