Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq50 105 6e-18 seq54 86.0 6e-12 >seq50 Length=657131 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||| | ||| || || || ||||| || || || || || | ||| | | Sbjct 305920 CTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCA 305979 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||||| ||||| | |||| | || ||||| || || |||||||||||| Sbjct 305980 TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTA 306039 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| || | || | || || || | ||| ||||| || || | Sbjct 306040 TCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATG 306099 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || || || ||||| ||||||||||||||| ||| || Sbjct 306100 GTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCATCCCGCCAC 306142 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| || || || || |||||| | ||| | || |||| ||| Sbjct 306388 TGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTGC 306447 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 |||||||| | || | ||||| ||||| |||||||| ||||| || || ||||||||| Sbjct 306448 TTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTTT 306507 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | |||| ||||| || | ||| ||||| | || | ||| || ||||| Sbjct 306508 GCTTTCA-CGTTCTCTATCGTGTCCGACGGCTCCACTTCCAACGTTATCGTCTTCCCGGT 306566 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||||||||| Sbjct 306567 CAACGTCTTCACGAAAATTTGCAT 306590 >seq54 Length=544971 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 |||| || || |||||||||||| | ||||| ||||||||||| || || | ||| |||| Sbjct 190878 TCGAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAAGAGCAACCAGA 190819 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||| | || || || ||| |||| ||| | || | |||||| | || ||| || | | Sbjct 190818 AGAACCTTGGCACCATCAAAGGTAGCAATTTATGTACAGAAATTGTTGAGTAC-GCCA-G 190761 Query 123724 C--CGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 | ||| ||||||| || || || ||||| || Sbjct 190760 CAAGGATGAAGTGGCTGTCTGCAACTTGGCGTC 190728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987029585520