Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq50 134 3e-26 seq1 114 3e-20 >seq50 Length=657131 Score = 134 bits (148), Expect = 3e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || || ||||| |||| |||||| || | ||| || || |||||| Sbjct 306607 AGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCT 306666 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| |||||||| || || || ||| ||||| || Sbjct 306667 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCT 306726 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||| ||||| || || | | || || ||||| ||||| ||| Sbjct 306727 TGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTC 306786 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || |||||||| || || || |||||| Sbjct 306787 TTCCCAGTCAGTGTTTTCACGAAGATCTG---CATTTT 306821 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || ||||| ||||| || | ||||||||||| || || |||||||| ||||| || Sbjct 306159 GTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATCCAGTTG 306218 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| |||||||| | ||||||||| || || ||| |||||| || || || || Sbjct 306219 CTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGTATTTT 306278 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| || || || || | | || || || | ||| |||||||| || || Sbjct 306279 CGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCTTGCCAGT 306338 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || Sbjct 306339 TAGGGTTTTCACGAAAATCTG 306359 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | ||||| || | || ||||| |||||||| || | ||||||||| | | || Sbjct 305913 TCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGT 305972 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||||||| || || || ||||| || | ||| ||||| ||| || || Sbjct 305973 TCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCC 306032 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||| || |||||| |||| || || | | ||||| || | Sbjct 306033 TTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAG 306092 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||||||||||||||| Sbjct 306093 TGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTG 306131 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| |||||||||| || || ||| ||||||||||| ||||| Sbjct 306692 CTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTACAACATCCAG 306633 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || || ||||| |||||||| || Sbjct 306632 AAGGAATCTACGCTTCACCTGGT 306610 >seq1 Length=9216672 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || || ||||| |||| ||||||||| | | ||| || || |||||| Sbjct 4066161 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4066220 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 || || || |||||||||||||| | ||||||||| || || || || || ||| Sbjct 4066221 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4066280 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| |||||| ||| | ||||| | | || || |||| ||||| ||||| Sbjct 4066281 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4066340 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || ||||| || Sbjct 4066341 CCTGTGAGGGTCTTGACGAAAATCTG 4066366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178878369681754