Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq50 122 3e-22 seq1 122 3e-22 >seq50 Length=657131 Score = 122 bits (134), Expect = 3e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || ||||| || || ||||| || || || || | || Sbjct 306363 AATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTC 306304 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| | || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 306303 GGATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCA 306244 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || ||| | || || ||||| || ||||||||||| || | || || || Sbjct 306243 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAA 306184 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 ||| | ||||| | || |||||||| || ||| ||||| Sbjct 306183 CATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTG 306144 Score = 122 bits (134), Expect = 3e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| |||||||||||||| || ||||| ||| | || || || | || Sbjct 306819 AATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTC 306760 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | || ||||| ||||| |||||||| ||||| || ||||| Sbjct 306759 CGATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCA 306700 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | || ||| | || || || || |||||||| ||||| ||| | ||||| || Sbjct 306699 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTACAA 306640 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 306639 CATCCAGAAGGAATCTACGCTTCAC 306615 Score = 120 bits (132), Expect = 1e-21 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || || | || || || | || Sbjct 306590 ATGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCG 306531 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | ||| ||||||||| || |||||||| ||||| || || ||| Sbjct 306530 GACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAA 306471 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| |||| || ||||| || || |||||||| ||| | ||||| || Sbjct 306470 CAACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAAC 306411 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACATTTTTT 391288 ||| | || || ||||||||||||| ||| | || || | ||| ||| || |||| Sbjct 306410 ATTCAGAAAGAATCAACACTTCACTTGGTACTTCGATTGCGTGGAGGAATGCAGATTTT 306352 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || ||||| || || || || || || | ||| Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || |||||||||||||| ||||| || |||||||| ||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || |||||||||| || |||||||| ||||| | |||| || || Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || ||||| || || || ||| | |||| Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGG 305911 >seq1 Length=9216672 Score = 122 bits (134), Expect = 3e-22 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 451193 GGAAAGCC-CTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 || ||||| ||| || |||| |||| |||| || || ||| ||| ||||| || Sbjct 4692964 GGCAAGCCACTA-ATCGAAGTGCATTACCAAGGAGAGACGAAATGTTTCCACCCTGAGGA 4692906 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 ||||| | ||||| || || |||||||||| | ||| || ||||| || Sbjct 4692905 GATTTCTGCGATGGTGCTGGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCC 4692846 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| | || || || || || || ||||| |||||||||||| | || || ||||| || Sbjct 4692845 AGTGAAAGAAGCGGTTATCACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCAC 4692786 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || ||||| ||||| || || ||||||||||| || || || || || Sbjct 4692785 AAAAGATGCTGGCACGATTGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGC 4692726 Query 451432 AGCTGCTCTAGCATATGGACT 451452 |||||| | || ||||| || Sbjct 4692725 AGCTGCAATTGCGTATGGTCT 4692705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975645951641096