Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 217 1e-50 >seq1 Length=9216672 Score = 217 bits (240), Expect = 1e-50 Identities = 929/1456 (64%), Gaps = 34/1456 (2%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || ||||| || |||| ||||| | | ||| || || || ||||| ||||| || ||| Sbjct 4691772 GTGGATTTGTCCTCGGCTGTCACGCTCATAATGCCGTTTGCGTCCAAGTCAAACGTAACT 4691831 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 ||||| || || || || | | || || ||||| || |||| | ||| | |||| | Sbjct 4691832 TCAATCTGCGGAACTCCCCGGGGGGCGGGAGGGATGCCATCCAGGTGGAATTTACCCAAA 4691891 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || ||||| || | | |||||||| ||||| | || || || | | Sbjct 4691892 AGATTGTTGTCTTTCGTCAGTGGACGTTCACCTTCGAAGACCTGAATGAGCACCCCGGGC 4691951 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 |||||||| || || || ||||| | | || || || ||| || || || || | | Sbjct 4691952 TGATTATCAGAGTACGTCGTAAAGATTTGCGACTTCTTTGTAGGGATCGTCGTATTCCGA 4692011 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 ||||| | ||||| | ||||| || ||||||| || || ||||| || | ||| Sbjct 4692012 GGAATAAGTGTAGTCATGACGCCACCGGCAGTTTCTAGTCCGAGGGAAAGTGGCGCCACA 4692071 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 517603 || | |||| | | || | || || ||| | |||||| ||||| Sbjct 4692072 TCGAGGAGGAGCAACTGCTGTACTTGAGAGCTGGTGACACCCTTGATAATAGCGGCTTGC 4692131 Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 | ||||| ||||| || || |||||||| || || | | ||| |||||| Sbjct 4692132 ACTGCAGCGCCATACGCGACGGCTTCATCGGGGTTGATGGACCGGCAGGGTTCTTTACCG 4692191 Query 517664 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 517723 ||||| || | | || | ||| | || ||||| | | || || || || | | Sbjct 4692192 TTGAAGAATTCGGTAATGAATTGCTGGATTTTCGGAATTCTCGTGGACCCCCCGACCAGT 4692251 Query 517724 ACAATTTCATGCACCTGTGATTTATCCAGTTTT-GAATCCAATAAAACTTTTTCAACGGG 517782 |||| ||| || || | | |||| | || || || || || || || Sbjct 4692252 ACAACTTCGCTTAC-TGAGCGCTTGTCAGTACCAGCGTCTTTCAACACCTTCTCGACCGG 4692310 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 || || | || |||| ||||||||||| || || | || ||| Sbjct 4692311 GTCCAGCGAGTGACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGTGCGC--GTGAGATG 4692368 Query 517843 GA--CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 517900 || || || ||||| |||||| ||| || || | |||||| || | || || | Sbjct 4692369 GAAACAGAGTAGTCAATACCTTCGTACAGCGAGTCGATTTCAATGGTCGCCTGCGTGCTA 4692428 Query 517901 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA-----GGCTT 517955 || || | || || || ||||| || |||| || | || | |||| Sbjct 4692429 CTGGAAAGGGTGCGCTTCGCGCGTTCGCACTGAGTCCGGAGACGACGCAGAGCACGGCTG 4692488 Query 517956 TT---GCTGAT-TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 518011 || |||||| | ||| |||||| | |||||||||| || | ||||| | Sbjct 4692489 TTCGAGCTGATGTCCTTCCC-TCTGTTCT-----TTCTCTTGAAGTCCTGCACACAGAAG 4692542 Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || || || || ||||| || | || | |||| ||| || | Sbjct 4692543 TCCACCAGGCGATTGTCGAAGTCCTCGCCTCCTAAATGCGTGTCGCCTGCCGTTGCCCGC 4692602 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||||| || ||||||| | ||| |||| || ||| ||| |||||||||||| Sbjct 4692603 ACCTCGAAAATGCCGTCTTCAATCGTCAAGAGAGAGACGTCAAAGGTGCCACCACCCATA 4692662 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || ||||| | ||| |||| ||| | || || ||||||||||||| ||| Sbjct 4692663 TCGAAAATCAACACAATCATCTCTCCACACCCGCGCTTGTCCAGACCATACGCAATTGCA 4692722 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || |||||||| || || ||||||| | || || | ||| ||||| | || |||||| Sbjct 4692723 GCTGCAGTTGGCTCGTTGATAATTCGAAGTACGTTCAAACCTGCAATCGTGCCAGCATCT 4692782 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || |||||||| | || ||||| || ||||| || || || || ||||| || || | Sbjct 4692783 TTTGTGGCTTGGCGCTGAGAATCATTGAAATACGCGGGCACCGTGATAACCGCTTCTTTC 4692842 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCG---TTTGTTTCATTTTACTTAAAATCATTGAT 518368 ||| ||||| |||| | ||| ||| |||||| || | | | ||| | Sbjct 4692843 ACTGGGCGACCAAGGTAAG---ATTCCGAAATTTCTTTCATCTTGCCCAGCACCATCGCA 4692899 Query 518369 GAAATTTGTTCTGG--GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATG 518426 ||||| | || || |||| | || | || ||| || ||||| | || Sbjct 4692900 GAAATCTCCTCAGGGTGGAAACAT--TTCGTCTCTCCTTGGTAATGCACTTCGATTAGTG 4692957 Query 518427 GTTTATTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACAC 518483 | || ||| || || ||||| || ||||||| |||||| || ||||| || Sbjct 4692958 GCTTGCCACCTTTGCCAGCGATGACTTTGAACGGCCAGTGTTTCATGTCAGATTGCACCG 4693017 Query 518484 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 518543 |||||| || | | ||||| | ||||||||||| ||||| ||||| || | Sbjct 4693018 AGGGGTCATCGAACTTGCGGCCAATCAGGCGTTTTGCATCGAAAATCGTATTCTCCGGGT 4693077 Query 518544 TAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 518603 | || |||| | ||| || ||||| |||| || |||| || || ||||| | | Sbjct 4693078 TGCGCGCCACTTGGTTTTTCGCGGCATCCCCAACAAGTCGTTCCGTGTCGGTAAACGCCA 4693137 Query 518604 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 518663 | || || || || ||||| || || ||||| |||||||| ||||| || | |||||| Sbjct 4693138 CGTACGACGGCGTAGTGCGGTTGCCCTGATCGTTCGCAATGATTTCCACCGTGTCATTTT 4693197 Query 518664 GCCATACACCTACACA 518679 ||| ||||| || || Sbjct 4693198 TCCACACACCAACGCA 4693213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780680378132572