Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 370 1e-97 >seq1 Length=9216672 Score = 370 bits (410), Expect = 1e-97 Identities = 1077/1645 (65%), Gaps = 26/1645 (2%) Strand=Plus/Plus Query 6511 CATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGC--GTACTTT 6568 ||| || || || ||||| || | || ||| |||||||| || | | ||| || | | Sbjct 4691609 CATGTGGTAGCAATAGTTCTCCAAACTATTTTTCGCCTCAAC--TCTACGCATGTTCGCT 4691666 Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||||||| |||| ||||| || || || || ||||| | || || || | Sbjct 4691667 TCATCTTCAGCTTTGTACTTCTCTGCTTCCTGCACCATGCGGTTGATCTCGTCCTGGCTG 4691726 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || || || || ||||| ||||| |||| | ||| || | || || || || Sbjct 4691727 AGTCGTCCTTTCTCGTTCGTGATCGTGATCTGGCTGCTTTTCCCGGTGGATTTGTCCTCG 4691786 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | || ||| ||| || ||||| || | || ||| | || | ||| || || Sbjct 4691787 GCTGTCACGCTCATAATGCCGTTTGCGTCCAAGTCAAACGTAACTTCAATCTGCGGAACT 4691846 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 |||| || |||| || || || | | ||| |||| | | | |||| || || Sbjct 4691847 CCCCGGGGGGCGGGAGGGATGCCATCCAGGTGGAATTTACCCAAAAGATTGTTGTCTTTC 4691906 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | |||||||||||| |||| | ||| |||| | || |||||||| | Sbjct 4691907 GTCAGTGGACGTTCACCTTCGAAGACCTGAATGAGCACCCCGGGCTGATTATCAGAGTAC 4691966 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || | |||||||| ||||| | || ||||||||||| | ||||||| | ||| Sbjct 4691967 GTCGTAAAGATTTGCGACTTCTTTGTAGGGATCGTCGTATTCCGAGGAATAAGTGTAGTC 4692026 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | ||||| |||||| ||||| || || || || | ||| || | ||| | || Sbjct 4692027 ATGACGCCACCGGCAGTTTCTAGTCCGAGGGAAAGTGGCGCCACATCGAGGAGGAGCAAC 4692086 Query 6989 TCTTGAAC---AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | || || ||| | | | |||| | | || |||||||| || | || || Sbjct 4692087 TGCTGTACTTGAGAGCTGGTGAC---ACCCTTGATAATAGCGGCTTGCACTGCAGCGCCA 4692143 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| || ||||||||||| || | ||||||||||||| || ||| | Sbjct 4692144 TACGCGACGGCTTCATCGGGGTTGATGGACCGGCAGGGTTCTTTACCGTTGAAG-AATTC 4692202 Query 7106 GATAAC-ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | ||| | ||| || |||||||| |||| || || || ||||||| || | ||| | Sbjct 4692203 GGTAATGAATTGCTGGATTTTCGGAATTCTCGTGGACCCCCCGACCAGTACAACTTCGCT 4692262 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 ||| || || | | |||| | || ||||| || |||| | | Sbjct 4692263 TACTGAGCGCTTGTCAGTACCAGCGTCTTTCAACACCTTCTCGACCGGGTCCAGCGAGTG 4692322 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 |||||| ||||||| || ||||| ||||||||||| || | ||||| | || | || Sbjct 4692323 ACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGTGCGCGTGAGATGGAAACAGAGTAGTC 4692382 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCG 7344 || || ||||| | ||| || ||||||||||| | || | | || | || || Sbjct 4692383 AATACCTTCGTACAGCGAGTCGATTTCAATGGTCGCCTGCGTGCTACTGGAAAGGGTGCG 4692442 Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATC 7404 ||| ||||| || ||| || || | |||||| || ||||| ||| | || || Sbjct 4692443 CTTCGCGCGTTCGCACTGAGTCCGGAGACGACGCAGAGCACGGCTGTTCGAGCTGATGTC 4692502 Query 7405 TTTCT-TATGTT--TACGTTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 ||| | |||| | | || || || | || |||||| ||| | | || Sbjct 4692503 CTTCCCTCTGTTCTTTCTCTTGAAGTCCTGCACACAGAAGTCCACCAGGCGATTG---TC 4692559 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || || || || || || || || || || || || || || || | Sbjct 4692560 GAAGTCCTCGCCTCCTAAATGCGTGTCGCCTGCCGTTGCCCGCACCTCGAAAATGCCGTC 4692619 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | || | || || ||||| || |||||||||| || ||||| | || | Sbjct 4692620 TTCAATCGTCAAGAGAGAGACGTCAAAGGTGCCACCACCCATATCGAAAATCAACACAAT 4692679 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 | | || | | ||| || ||||| ||||| || || || || ||||| || || Sbjct 4692680 CATCTCTCCACACCCGCGCTTGTCCAGACCATACGCAATTGCAGCTGCAGTTGGCTCGTT 4692739 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 ||||| ||||| ||||| || ||||| || | |||||||| || ||||| || || Sbjct 4692740 GATAATTCGAAGTACGTTCAAACCTGCAATCGTGCCAGCATCTTTTGTGGCTTGGCGCTG 4692799 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 ||||| || || || || || ||||| | ||||| || | ||| ||| || || Sbjct 4692800 AGAATCATTGAAATACGCGGGCACCGTGATAACCGCTTCTTTCACTGGGCGACCAAGGTA 4692859 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC-GCAA 7817 ||||||| || |||||||| ||| || ||||||| |||||||| |||| | || Sbjct 4692860 AGATTCCGAAATTTCTTTCATCTTGCCCAGCACCATCGCAGAAATCTCCTCAGGGTGGAA 4692919 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 || |||||| || || | ||| ||||| || | || || | | || | || Sbjct 4692920 ACA-TTTCGTCTCTCCTTGGTAATGCACTTCGATTAGTGGCTTGCCACCTTTGCCAGCGA 4692978 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | || || ||| ||| | |||||| || ||| ||| |||| ||||| | | Sbjct 4692979 TGACTTTGAACGGCCAGTGTTTCATGTCAGATTGCACCGAGGGGTCATCGAACTTGCGGC 4693038 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 | || || || |||||||| |||| || || | ||||| || |||||| |||| Sbjct 4693039 CAATCAGGCGTTTTGCATCGAAAATCGTATTCTCCGGGTTGCGCGCCACTTGGTTTTTCG 4693098 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || ||||| | ||| ||||| | | | |||||||| |||||||| || || || | Sbjct 4693099 CGGCATCCCCAACAAGTCGTTCCGTGT---CGGTAAACGCCACGTACGACGGCGTAGTGC 4693155 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 | || || || ||||||||||| ||||| || ||| |||| ||| || || ||||||| Sbjct 4693156 GGTTGCCCTGATCGTTCGCAATGATTTCCACCGTGTCATTTTTCCACACACCAACGCACG 4693215 Query 8118 AATACGTTGTTCCTAAATCAATACC 8142 | ||||| || || | ||||| || Sbjct 4693216 AGTACGTGGTCCCCAGGTCAATCCC 4693240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110078124080