Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq54 111 2e-19 >seq54 Length=544971 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 |||| |||| | || || || || || |||||| | ||||||||||| || || | || Sbjct 227892 CAAG-CTCAGATAGAAACAGGCACTCCGTATATGATGTACAAAGACGCTTGCAATAAGAA 227950 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| || || |||||| |||| ||| || | |||||| || || ||| | | || Sbjct 227951 GAGCAACCAGAAGAATCTGGGGACGATAAAATGCGGCAACCTATGCACCGAAGTGGTCGA 228010 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 ||||| | || ||| || |||||||||||||| || ||| | | || ||||||| Sbjct 228011 GTTTACTGGCAGAGACGAAGTCGCTGTGTGTAACCTTGCGTCAGTTTCGCTTCCCAAGTT 228070 Query 112472 TGTGGATCC-AGAGACAAAGACATTTGATTATGAAAAACT 112510 |||||| || ||| | |||| ||||| ||||||| || || Sbjct 228071 TGTGGAGCCTAGA-AGAAAGTCATTTAATTATGAGAAGCT 228109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 240/363 (66%), Gaps = 7/363 (2%) Strand=Plus/Minus Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 |||| |||| | |||||| || || || || ||| | ||||| |||||||| || ||| Sbjct 190888 CAAG-CTCAGATCGAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAA 190830 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| || || ||||| | || ||||| || ||| | ||||||||||| | || Sbjct 190829 GAGCAACCAGAAGAACCTTGGCACCATCAAAGGTAGCAATTTATGTACAGAAATTGTTGA 190770 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 | | ||| ||||| |||||| || ||| | || || | | || || ||||| Sbjct 190769 GTACGCCAGCAAGGATGAAGTGGCTGTCTGCAACTTGGCGTCTCTGTCCCTTCCGAAGTA 190710 Query 112472 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 112531 ||| |||| || || ||||| || |||| || ||||| | | ||| ||| | Sbjct 190709 TGTTGATCGGGAAACGAAGACTTTCAATTACGACAAACTAAAAGCTGTTGTCAAAGTCGC 190650 Query 112532 CACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCG 112588 ||| || || || | || || || || || | ||||| | ||| || || Sbjct 190649 GACACGCAATCTGAATCGCGTGATCGACAGGAACTACTACCCTATCCCTGA---AGCGCG 190593 Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648 | ||| |||| |||||||| || || || ||||| ||||||||||| || | || Sbjct 190592 CAGGAGTAACCTGAGGCACCGTCCGATCGGGCTGGGTGTTCAAGGTCTCGCAGACGCGTT 190533 Query 112649 CAT 112651 ||| Sbjct 190532 CAT 190530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620720192940640