Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq54 105 8e-18 >seq54 Length=544971 Score = 105 bits (116), Expect = 8e-18 Identities = 259/383 (68%), Gaps = 16/383 (4%) Strand=Plus/Plus Query 110073 GTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAA 110131 |||||||||| ||| || | || ||| | || || ||||| |||||||| || || | Sbjct 190508 GTCGAAGGGAT-ACCGCAGCATCATGAACGCGTCTGCGAGACCTTGAACACCCAGCCCGA 190566 Query 110132 TGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG---GGGTAAAAGTTGCGGT 110188 | || || ||| ||| |||| | || || ||| | ||||| |||| | || Sbjct 190567 TCGGACGGTGCCTCAGGTTACTCCTGCGCGC---TTCAGGGATAGGGTAGTAGTTCCTGT 190623 Query 110189 CGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCA---TGGAGTTTGTCGT 110245 |||| || ||||| ||||| ||| | | ||| ||| || | |||||||||| Sbjct 190624 CGATCACGCGATTCAGATTGCGTGTCGC-GACTT--TGACAACAGCTTTTAGTTTGTCGT 190680 Query 110246 AATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 ||| ||| || ||||| ||| || ||||| || || || | | |||||| | |||| Sbjct 190681 AATTGAAAGTCTTCGTTTCCCGATCAACATACTTCGGAAGGGACAGAGACGCCAAGTTGC 190740 Query 110306 ACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCT 110365 | |||| || || ||| || ||| || | |||||| ||||| || ||| || | Sbjct 190741 AGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTACATAAATTGCTACCTT 190800 Query 110366 TAATGACACCCAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATG 110424 | ||| || | ||||||||| || | ||| | ||||| || ||||| || | |||| Sbjct 190801 TGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTA-TTGCAGGCGTCCTTGTACATCATG 190859 Query 110425 TATGGGGTACCAGTTTCCGTCTG 110447 || || || || || || |||| Sbjct 190860 TACGGCGTCCCTGTCTCGATCTG 190882 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 ||||||||||||| ||| || || || ||| | |||| |||| | |||||||||| Sbjct 229162 CGAAGATAATACAAACCTGTCTTTAGTCCACGCCTCCAGCCGTAGAAGTGCATTGAAGTA 229103 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || |||| || || | |||| | ||| | |||||||||||||||||| ||| Sbjct 229102 AGCTTGGCGTACGTGGGGTTGACCATGTGGATGTTAAGCGACTGAGACTGATCGATAAAT 229043 Query 109528 CGACCACGATCAGCCGCCATGTCGA-TGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 || | |||| |||| | ||| | | | |||| ||| | || ||||| ||||||| Sbjct 229042 GGAGACCTATCAACCGCGAGGTCCAGTAAGACAC-GTTGTTTTATCTCCCAAGCAGTCTT 228984 Query 109587 GTACAAATTCTTGATATCATCGGGAA 109612 ||||| | ||||| || || |||| Sbjct 228983 GTACAGAGCCTTGAGGTCTTCAGGAA 228958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588954929383600