Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq50 170 4e-37 seq1 134 3e-26 >seq50 Length=657131 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| ||||| |||||||||| | ||||| || || || || || Sbjct 306387 GTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTG 306446 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 306447 CTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTT 306506 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || |||||||| || |||||||| |||||||| | || | |||||| || || Sbjct 306507 TGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAACGTTATCGTCTTCCCGGT 306566 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | |||||| Sbjct 306567 CAACGTCTTCACGAAAATTTGCAT 306590 Score = 156 bits (172), Expect = 9e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | |||||||| ||||| || ||||| ||||| || | || ||||| || Sbjct 305919 TCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCC 305978 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| ||||| || ||||| ||||| || | |||||||| ||||| ||||||||||| Sbjct 305979 ATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTT 306038 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||||||||||| ||| || ||||| || || || || || ||||| || || | Sbjct 306039 ATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGAT 306098 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| | ||||| || || | |||||| Sbjct 306099 GGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | |||||| || || || || ||||| ||||| || | | ||||| Sbjct 306145 AGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTT 306204 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || || ||||| || |||||||| | || || || || || ||||| |||||| Sbjct 306205 CCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCT 306264 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| ||||| ||| |||||||| | || ||||| ||||| || || ||| Sbjct 306265 TTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTA 306324 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||| ||||| | |||||| Sbjct 306325 ATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 >seq1 Length=9216672 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || || || ||||| |||| |||||||| || ||||| Sbjct 4066161 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4066220 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || | || ||||| || || || || || ||||||||| Sbjct 4066221 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4066280 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| || || ||||| ||||| ||| || ||||| ||||| | ||||| Sbjct 4066281 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4066340 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | ||||| Sbjct 4066341 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4066369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109440916003154