Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-22 seq50 114 1e-19 seq28 93.3 3e-13 >seq1 Length=9216672 Score = 122 bits (134), Expect = 7e-22 Identities = 362/553 (65%), Gaps = 13/553 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || || | || ||||| || || |||||||| ||| |||||| | Sbjct 4693246 GCTGTGGGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACG 4693187 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| ||||| || ||||| || ||| | ||||| || || || || | || || Sbjct 4693186 GTGGAAATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACC 4693127 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | ||||| ||||| || ||| | |||| | | || || ||| Sbjct 4693126 GACACGGAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAAT 4693067 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || ||||| ||||| ||||| | ||||| | | || |||| | | || || | Sbjct 4693066 ACGATTTTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCT 4693007 Query 550232 GATATGAAGCATTGGCCTTTCCAAAT------TGTTAATGTTTCTGGAAAACCTTATATT 550285 || ||||| || ||||| ||| || | || || | | || || || || Sbjct 4693006 GACATGAAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGT---GGCAAGCCACTAATC 4692950 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCA-GAACAAATTTCATCTATGGT 550344 |||| | | ||||| ||| ||| |||| || | ||||| | ||||| Sbjct 4692949 GAAGTGCATTACCAAGGAGAGACGAAATG-TTTCCACCCTGAGGAGATTTCTGCGATGGT 4692891 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | || |||||| ||| | ||| |||||| ||| | || || || Sbjct 4692890 GCTGGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGT 4692831 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-AC 550463 || || || || || ||||| ||||| || || || ||||| || ||||||||||| || Sbjct 4692830 TATCACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCAC 4692771 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 | ||||| || | || || ||||| |||||||| || || ||||| |||||| |||| | Sbjct 4692770 G-ATTGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGT 4692712 Query 550524 ATGGACTTGATAA 550536 |||| || || || Sbjct 4692711 ATGGTCTGGACAA 4692699 Score = 86.0 bits (94), Expect = 5e-11 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| | || || || || || ||||||| | || || | ||||||| ||||| Sbjct 4692073 GATGTGGCGCCACTTTCCCTCGGACTAGAAACTGCCGGTGGCGTCATGACTACACTTATT 4692014 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | | ||||| || || ||| || || || | | ||| | ||||| || |||||| Sbjct 4692013 CCTCGGAATACGACGATCCCTACAAAGAAGTCGCAAATCTTTACGACGTACTCTGATAAT 4691954 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || | | || ||||| | || ||||| ||| | | | || ||||| || ||| Sbjct 4691953 CAGCCCGGGGTGCTCATTCAGGTCTTCGAAGGTGAACGTCCACTGACGAAAGACAACAAT 4691894 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 | | |||| || | | || || || ||||| || || || ||||| ||||| ||| Sbjct 4691893 CTTTTGGGTAAATTCCACCTGGATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATT 4691834 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||||||| || || | || || || || ||| ||| ||||| || Sbjct 4691833 GAAGTTACGTTTGACTTGGACGCAAACGGCATTATGAGCGTGACAGC 4691787 >seq50 Length=657131 Score = 114 bits (126), Expect = 1e-19 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 563271 ATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTG 563330 |||||| ||| || || ||| ||||| || | ||| ||||| |||||| || || Sbjct 305931 ATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTG 305990 Query 563331 TTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||| || ||||| || || || || || |||||||| || |||||||||||||||||||| Sbjct 305991 TTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTT 306050 Query 563391 TTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAG 563449 || || ||| || ||||||| | ||| ||| || || | ||||| || | Sbjct 306051 AGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC-TTCTAGTGTGATGGTTTTTCCTG 306109 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 |||| ||||| || ||||||||||| Sbjct 306110 TAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||| || ||| ||||| |||| || |||||| ||| || | Sbjct 306156 CAAG-TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATCCA 306214 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| ||||| || || || | | ||||||||||| ||||| |||||||| ||||| | Sbjct 306215 GTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGTA 306274 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| || || ||| | ||||| | | | || || || |||| || || Sbjct 306275 TTTTCGTCTTCACGTTCTCTACCGTATCCG-ACGGCTCCACCTCTAGCGTAATCGTCTTG 306333 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| |||||||| ||||| Sbjct 306334 CCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || ||||| | ||||| || |||||| ||| |||||||| | | |||||| Sbjct 306376 CGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCG 306435 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || ||||| ||||| ||||||||||| | ||| || || || ||||| ||||| || Sbjct 306436 TCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTG 306495 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 || ||||||||| ||| || ||| || || || | | | || ||| | || | Sbjct 306496 TCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCG-ACGGCTCCACTTCCAACGTTAT 306554 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || | || || |||||||||||||| Sbjct 306555 CGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 >seq28 Length=1500505 Score = 93.3 bits (102), Expect = 3e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| |||||| ||| |||||||||||||||||||| || ||||| || ||||| || ||| Sbjct 684568 TTTGATTTAGTAGGAATTCCTCCTGCTCCTCGTGGCGTTCCGCAGATCGAAGTGACCTTC 684627 Query 552555 GATATCGATGCCAATGGAATTTTGAA 552580 ||| |||||||||| || || |||| Sbjct 684628 GATGTCGATGCCAACGGCATCATGAA 684653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029144644532380