Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq50 149 5e-31 seq32 84.2 2e-11 >seq50 Length=657131 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || || |||||||| ||||| || || || ||||| || | | ||||| || Sbjct 306148 CGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA 306207 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| |||||| || || || ||||||||||| ||||| || ||||| |||||||| Sbjct 306208 TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTG 306267 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| ||||| || || | ||||| || || |||| ||||| || || || | | Sbjct 306268 TCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATC 306327 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| |||| ||||| || || |||||||| Sbjct 306328 GTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||| | || || |||||||| ||||| || || || || ||||| || || Sbjct 305908 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTC--CG 305965 Query 101303 ATAGT--TCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||||| |||| |||| |||| || || |||||||| |||| | |||||| || || | Sbjct 305966 ATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAG 306025 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||||||||||||||| || ||| | || | || ||||||| || | Sbjct 306026 GGATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTA 306085 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| ||||| || || | ||||| ||||| || ||||| Sbjct 306086 CTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | || | ||||| |||||||| || || || |||||||||| Sbjct 306592 CCACCCCGTAAACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGAC 306651 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| |||| ||||| || || || |||| ||||||||||||||| ||| Sbjct 306652 AACGTTCTGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGA 306711 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| ||||| || || |||| | || || || | ||||| Sbjct 306712 ATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACC 306771 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || | ||||| || || |||||||| Sbjct 306772 TCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTGCAT 306818 >seq32 Length=1241728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 194/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 13648 TATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGG 13707 || |||||| || | || ||||| | | ||||| | | | || ||||| || || Sbjct 911614 TACATTGAACTTCCTTTGGCAACCAGCGTAGTTCATATACCTAACCTTCCCATATATGGG 911673 Query 13708 TCGCTCCATCCAGGCACGATCGTG-AGTTCCGCATATTGACCACATGCAACCGGCATAAC 13766 || ||| | | | | ||||| || |||| || ||||||||||| ||| | |||| Sbjct 911674 TCTCTCTCTGAAAGGCTGGTCGTGCAGAGCCGCG-ATCGACCACATGCATCCGACGTAAC 911732 Query 13767 CGTTGGGATCGCGT-CCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAA 13825 |||||||||| ||| || |||| |||||||| || || |||| ||| || | Sbjct 911733 CGTTGGGATC-CGTCCCGTCCAGGCTGTATTTATCATTCAAATGTATAGCTCCCGCAAGT 911791 Query 13826 GCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATAT 13885 ||| | | |||||| | ||| || | || || || ||||| || || | || ||| Sbjct 911792 GCCTCAGCAGGCGATTTCATCCACTCCAGCATCTTCTTCGCCCAGTACATACGCAGATAG 911851 Query 13886 CCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932 |||||||| || |||| | | | ||||| ||| || || ||||| Sbjct 911852 CCGTGCATCTTTCCTTCCCTCATTAGCTGCTGCTGCGCTGCATTCCA 911898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396264577561734