Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 196 3e-44 seq50 107 1e-17 >seq1 Length=9216672 Score = 196 bits (216), Expect = 3e-44 Identities = 374/546 (68%), Gaps = 9/546 (2%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| || || | ||| ||| |||||| | || ||| Sbjct 4693240 GGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACGGTGGAA 4693181 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||||| || || || || || | || || || || || || | ||||| || || Sbjct 4693180 ATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACCGACACG 4693121 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| |||| ||||| || ||| | |||| || || || | ||||| ||| Sbjct 4693120 GAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAATACGATT 4693061 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||| ||| | ||||||| || || || ||||| || | || |||||||| ||| Sbjct 4693060 TTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCTGACATG 4693001 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTT---GGTGGTAAACCATATATAGAAG--CAA 474629 || ||||| || || || || || ||||| || ||| || |||| || Sbjct 4693000 AAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGTGGCAAGCCACTAATCGAAGTGCAT 4692941 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCG-GAACAAATTTCTTCAATGGTTTTAGCC 474688 ||| ||| || || ||| ||| |||| || | |||||| | ||||| | | | Sbjct 4692940 TACCA--AGGAGAGACGAAATG-TTTCCACCCTGAGGAGATTTCTGCGATGGTGCTGGGC 4692884 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 || |||||| ||| || || || ||||| | ||| | || || || || || Sbjct 4692883 AAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGTTATCACG 4692824 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| ||||||||||| || ||||| || |||||||| || | |||||| Sbjct 4692823 GTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCACGATTGCA 4692764 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || | || ||||| || || ||||| ||||| ||| |||| |||||||| Sbjct 4692763 GGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGTATGGTCTG 4692704 Query 474869 GATAAG 474874 || ||| Sbjct 4692703 GACAAG 4692698 Score = 95.1 bits (104), Expect = 8e-14 Identities = 250/373 (67%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA--GGTC 475850 || || |||||||| || || ||||| ||||| || ||||| |||||| |||| ||| Sbjct 4692166 AACCCCGATGAAGCCGTCGCGTATGGCGCTGCAGTGCAAGCCGCTATT--ATCAAGGGTG 4692109 Query 475851 A-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 | ||| | || || | | | | || | || || | |||||||| | || Sbjct 4692108 TCACCAG-CTCTCAAGTACAGCAGTTGCTCCTCCTCGATGTGGCGCCACTTTCCCTCGGA 4692050 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 || ||||| | || || | ||||||| |||||| | ||||| | ||||| | | Sbjct 4692049 CTAGAAACTGCCGGTGGCGTCATGACTACACTTATTCCTCGGAATACGACGATCCC-TAC 4691991 Query 475970 AAAAAA-TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028 ||| || || || | ||| | || || ||||||||||| | || ||| || | Sbjct 4691990 AAAGAAGTCGCAAATCTTTACGACGTACTCTGATAATCAGCCCGGGGTGCTCATTCAGGT 4691931 Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT---GGAACTTTTAATCT 476085 ||| ||||||||| | | | || ||||| || ||| ||| || | || | || Sbjct 4691930 CTTCGAAGGTGAACGTCCACTGACGAAAGACAA---CAATCTTTTGGGTAAATTCCACCT 4691874 Query 476086 TGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGA 476145 || || || ||||| || ||| | |||||||| || ||||||||||| ||||| | || Sbjct 4691873 GGATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATTGAAGTTACGTTTGACTTGGA 4691814 Query 476146 TGCAAATGGTATT 476158 ||||| || ||| Sbjct 4691813 CGCAAACGGCATT 4691801 Score = 93.3 bits (102), Expect = 3e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 480563 TACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTC 480622 ||| |||||||| || ||| || | || || || | ||||||||| ||||| Sbjct 4066160 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4066219 Query 480623 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTG 480682 ||||| || || || || || || | || || || || || || || ||||||||||| Sbjct 4066220 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4066279 Query 480683 AATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTT 480741 ||||||| || ||| ||||||||| || | | | || ||| ||||| || || | Sbjct 4066280 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAA-CTTCCAGGGTGATGGTCT 4066338 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| |||||||| || Sbjct 4066339 TCCCTGTGAGGGTCTTGACGAAAATCTG 4066366 >seq50 Length=657131 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || ||||| | |||||||| |||||| || || ||||| | | ||||| Sbjct 306376 CGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCG 306435 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| |||||||||||||||||||| || || ||||| ||||||||| Sbjct 306436 TCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTG 306495 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || ||||| ||| ||| || || || || || | | | | || ||| || || Sbjct 306496 TCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAA-CGTTAT 306554 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | ||||| ||||||||||| Sbjct 306555 CGTCTTCCCGGTCAACGTCTTCACGAAAATTTG 306587 Score = 86.0 bits (94), Expect = 4e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 ||| || || || ||||| ||| ||| || | || ||||| | | |||||| Sbjct 306603 ACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCC 306662 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| || || ||||| |||||||| || ||||| |||||||| Sbjct 306663 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTT 306722 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 |||||| || || || || ||| || ||||| | | | | | | ||| || | Sbjct 306723 GTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAA-AGTGA 306781 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || || ||||| || || Sbjct 306782 TAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTG 306815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268056434933576