Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1 354 1e-92 seq50 176 6e-39 seq54 89.7 7e-13 >seq1 Length=9216672 Score = 354 bits (392), Expect = 1e-92 Identities = 1039/1586 (66%), Gaps = 15/1586 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| | || || || | || || || ||||| || |||||||| ||| ||||||| Sbjct 4693246 GCTGTGGGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACG 4693187 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || || |||| || || || ||||| || || || |||||||| || ||||| Sbjct 4693186 GTGGAAATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACC 4693127 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | ||||| || ||||| |||||||| ||||| || || ||||| ||| Sbjct 4693126 GACACGGAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAAT 4693067 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || | || || || || || || ||||| |||||||| || || ||| Sbjct 4693066 ACGATTTTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCT 4693007 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || || ||||| | | |||| | | || | || ||||| | || | Sbjct 4693006 GACATGAAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGTGGCAAGCCACTAATCGAA 4692947 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || | | || || |||| |||| ||| | ||| || || ||||| | |||||| | Sbjct 4692946 GTGCATTACCAAGGAGAGACGAAATG-TTTCCACCCTGAGGAGATTTCTGCGATGGTGCT 4692888 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||| || | | ||||||||| | | ||| | |||||||| || ||| | Sbjct 4692887 GGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGTTAT 4692828 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || || |||| |||||| || || || || ||||| || |||| | || Sbjct 4692827 CACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCACGAT 4692768 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||| ||| | ||| ||| |||||||||| || ||||| || ||||||||||| ||||| Sbjct 4692767 TGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGTATGG 4692708 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||||| | | | ||| | | ||| ||||| || ||| | |||||||| || Sbjct 4692707 TCTGGACAAGCGCGGGTGTGGAGAGATGATTGTGTTGATTTTCGATATGGGTGGTGGCAC 4692648 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||||| ||||| || | | ||||||| || || ||||| || ||| || || || Sbjct 4692647 CTTTGACGTCTCTCTCTTGACGATTGAAGACGGCATTTTCGAGGTGCGGGCAACGGCAGG 4692588 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATG 196016 || || ||| |||| || || || ||||| || || | | | | ||| || | | Sbjct 4692587 CGACACGCATTTAGGAGGCGAGGACTTCGACAATCGCCTGGT-GGACTTCTGTGTGCAGG 4692529 Query 196017 AGTTCCGTCGAAAGAATA---AGAAAGATAT-TTCTGGAA-ATCCTAGGGCTCTTCGTCG 196071 | ||| ||||||| | ||| || || || ||| | || | ||||| ||||| Sbjct 4692528 ACTTCAAGAGAAAGAACAGAGGGAAGGACATCAGCTCGAACAGCC--GTGCTCTGCGTCG 4692471 Query 196072 GCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGT 196131 || ||||| || ||||| || || || || || || || | || | | | Sbjct 4692470 TCTCCGGACTCAGTGCGAACGCGCGAAGCGCACCCTTTCCAGTAGCACGCAGGCGACCAT 4692411 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 ||| || || ||| ||| || || ||||||| || | | || | || |||||||| Sbjct 4692410 TGAAATCGACTCGCTGTACGAAGGTATTGACTACTCTGTTTCCATCTCACGCGCACGTTT 4692351 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 |||||| | | || | || | | | |||| || || || | || | Sbjct 4692350 TGAAGAACTTTGCATGGACTACTTCCGTCACTCGCTGGACCCGGTCGAGAAGGTGTTGAA 4692291 Query 196252 TGACGCAAAGATGGATAAG-TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 ||||| | || ||| || | || ||| |||| || || || || || || Sbjct 4692290 AGACGCTGGTACTGACAAGCGCTCA-GTAAGCGAAGTTGTACTGGTCGGGGGGTCCACGA 4692232 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 | |||||||| || || || | || | |||||||| |||||| | Sbjct 4692231 GAATTCCGAAAATCCAGCAATTCATTACCGAATTCTTCAACGGTAAAGAACCCTGCCGGT 4692172 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 | |||||||| |||||||| || || ||||| || || || || || |||||| || | Sbjct 4692171 CCATCAACCCCGATGAAGCCGTCGCGTATGGCGCTGCAGTGCAAGCCGCTATTATCAAGG 4692112 Query 196431 GTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 |||| || | | || || | | || || || ||||| || || | ||||| | Sbjct 4692111 GTGTCACCAGCTCTCAAGTACAGCAGTTGCTCCTCCTCGATGTGGCGCCACTTTCCCTCG 4692052 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 | || ||||| || ||||| || ||||||| | ||||| | |||| || || || || | Sbjct 4692051 GACTAGAAACTGCCGGTGGCGTCATGACTACACTTATTCCTCGGAATACGACGATCCCTA 4691992 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 | |||||| ||| ||||| | ||||| || |||||||| || || || | ||||| | Sbjct 4691991 CAAAGAAGTCGCAAATCTTTACGACGTACTCTGATAATCAGCCCGGGGTGCTCATTCAGG 4691932 Query 196611 TATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 | | ||||| ||||| ||| || | || || ||| |||| | || | ||| | || Sbjct 4691931 TCTTCGAAGGTGAACG-TCCACTGACGAAAGACAACAATCTTTTGGGTAAATTCCACCTG 4691873 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 || || || | || ||| | || ||||| |||||| | ||| || || | ||| Sbjct 4691872 GATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATTGAAGTTACGTTTGACTTGGAC 4691813 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 ||||| || ||| | | ||| ||||| |||||||| | | || ||| |||| Sbjct 4691812 GCAAACGGCATTATGAGCGTGACAGCCGAGGACAAATCCACCGGGAAAAGCAGCCAGATC 4691753 Query 196790 GTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGAT 196849 ||| || || || || || || || |||| || || | || ||||| || || Sbjct 4691752 ACGATCACGAACGAGAAAGGACGACTCAGCCAGGACGAGATCAACCGCATGGTGCAGGAA 4691693 Query 196850 GCGGAAAAGTACAGGGAAGAAGACGA 196875 || || ||||||| | ||||| || Sbjct 4691692 GCAGAGAAGTACAAAGCTGAAGATGA 4691667 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| || |||||| | || Sbjct 4066369 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4066310 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || ||||||||||| ||||| || || || ||||| ||| Sbjct 4066309 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4066250 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || ||||| || ||||| || | || ||| | || |||||| Sbjct 4066249 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4066190 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGT 172070 | || ||||| || || || || || || Sbjct 4066189 ATCCAGAAGGAATCCACCCTTCATCTCGT 4066161 >seq50 Length=657131 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||||||||| |||||||| ||||| || || || ||| |||| Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || ||||||||||| |||||||| || || || || Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || |||||||| |||||||| | || || | || |||||| Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 |||| |||||||||||||| || | || | || | || |||||||| Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGTGC 305905 Score = 167 bits (184), Expect = 3e-36 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| |||||||| || ||||| || |||||||| | ||||| ||| | || Sbjct 306818 ATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTCC 306759 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | || || || || ||||| |||||||| |||||||||||||| Sbjct 306758 GATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCAA 306699 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| |||||||| | || | | ||||||||| Sbjct 306698 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTACAAC 306639 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 | || ||||| ||||| || ||||| || || | | |||||||| ||||| Sbjct 306638 ATCCAGAAGGAATCTACGCTTCACCTGGTCCTTCGTTTACGGGGTGGCATGCAA 306585 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||||||||| ||||| || || || || || ||||| ||| |||| Sbjct 306362 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 306303 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || ||| | || | || || ||||| || ||||| |||||||| |||||| Sbjct 306302 GATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCAG 306243 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || ||||| || || || || |||||| | || | |||| |||||| Sbjct 306242 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAAC 306183 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 |||| ||||| || || || ||| | || || | || || || || ||||| Sbjct 306182 ATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGGGATGCAA 306129 Score = 125 bits (138), Expect = 9e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || | || || || || || || | || || ||| |||| Sbjct 306590 ATGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCG 306531 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | ||||| || ||||| || |||||||| ||||| || || || Sbjct 306530 GACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAA 306471 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| ||||||||||| || || || || || || ||| | || | | ||||||||| Sbjct 306470 CAACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAAC 306411 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || || || || || ||| | || || Sbjct 306410 ATTCAGAAAGAATCAACACTTCACTTGGTACT 306379 >seq54 Length=544971 Score = 89.7 bits (98), Expect = 7e-13 Identities = 181/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 78644 GAGACCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAG 78703 ||||| || || ||||| ||| | ||||| ||| ||| || |||||| ||||| ||| Sbjct 190876 GAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAG 190817 Query 78704 AACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGGATAAG 78763 ||||| || ||||||| | || | || ||||||||| | || ||| | ||| Sbjct 190816 AACCTTGGCACCATCAAAGGTAGCAATTTATGTACAGAAATTGTTGAGTACGCCAGCAAG 190757 Query 78764 AATGAAACAGCTGTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGTTGATCGAGAA 78823 ||||| ||||| || || | | |||| | | || || |||| ||||||||| ||| Sbjct 190756 GATGAAGTGGCTGTCTGCAACTTGGCGTCTCTGTCCCTTCCGAAGTATGTTGATCGGGAA 190697 Query 78824 TTAAAGACATTTGATTATTCAAAGCTCCACGAAATTACAAAAATCGTAACTAAAAATTTA 78883 ||||| || |||| || || | | || ||| ||| || ||| | Sbjct 190696 ACGAAGACTTTCAATTACGACAAACTAAAAGCTGTTGTCAAAGTCGCGACACGCAATCTG 190637 Query 78884 AATCGTGTAATTGACCGTAACTACTACCC 78912 ||||| || || ||| | ||||||||||| Sbjct 190636 AATCGCGTGATCGACAGGAACTACTACCC 190608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657838864972640