Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq50 132 9e-26 >seq50 Length=657131 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| | || || || ||||| | ||||| ||| || ||| || || || || Sbjct 305907 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 305966 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || |||| ||||| || ||||| || | |||||||||||||| || Sbjct 305967 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 306026 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| |||||| || ||||| || ||||| |||| ||||| Sbjct 306027 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 306086 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||| || |||||||| || || | ||||| | || || ||||| Sbjct 306087 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 |||||||| || || || | || | || || ||| || || || ||||| | || | Sbjct 306145 AGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTT 306204 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | ||||||| ||| || ||||| || || || | ||| || |||||||| || |||||| Sbjct 306205 CCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCT 306264 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||||||||| | || || || || ||||| |||| || || ||||| ||| Sbjct 306265 TTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTA 306324 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||||| ||||| | ||| ||||||||| Sbjct 306325 ATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905103618759600