Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq50 134 1e-26 seq1 86.0 5e-12 >seq50 Length=657131 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | ||||| |||||||| || | ||| ||| | Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||| |||||||||||| | || || || Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || ||||||||||| || | || |||| | ||||||||||| Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| | || ||||||||||||| ||||| || Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 305908 >seq1 Length=9216672 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | ||||| || ||||| ||| | ||| |||||| | Sbjct 4066369 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4066310 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || ||||||| || || || || | ||| || ||| Sbjct 4066309 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4066250 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || ||||| ||||| |||| || ||| | | ||||||||| Sbjct 4066249 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4066190 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||| || || Sbjct 4066189 ATCCAGAAGGAATCCAC 4066173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398862886927918