Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq50 113 7e-20 >seq50 Length=657131 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | ||||||||||| || || | || ||||| | | Sbjct 306133 TGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCTG 306074 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || |||||| ||| |||||||||||| || || || |||| Sbjct 306073 ATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAAC 306014 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| ||||| | || ||| ||||| || | || || || | Sbjct 306013 AGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAACA 305954 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || || || ||| | ||||| || || ||||| |||| ||| Sbjct 305953 TTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGT 305907 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || || || | || || || | | Sbjct 306589 TGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCGG 306530 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| || || ||||| ||||| || || |||| Sbjct 306529 ACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAAC 306470 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||||||||| || ||| | || || |||||||| | ||||| || | Sbjct 306469 AACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACA 306410 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || | || || ||| | ||||| | ||||| Sbjct 306409 TTCAGAAAGAATCAACACTTCACTTGGTACTTCGATTGCGTGGAGG 306364 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||| | || || || || || ||| | || || || | || Sbjct 306817 TGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTCCG 306758 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || || ||||| ||| || ||||| |||||||||||||||| Sbjct 306757 ATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCAAC 306698 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || || || || || || | || ||| |||||||| | ||||| || | Sbjct 306697 AGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTACAACA 306638 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 306637 TCCAGAAGGAATCTAC 306622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786138274897040