Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq50 132 4e-26 seq1 96.9 3e-15 >seq50 Length=657131 Score = 132 bits (146), Expect = 4e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 |||||| ||||| || ||||| || |||||||| || || | | || | |||||| Sbjct 306153 CACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATC 306212 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||| || ||||| | ||||| | |||||||| || ||||| || ||||||||||| Sbjct 306213 CAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTG 306272 Query 29697 TAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 | ||||| || || || | ||||| || || || | || || || || || || || | Sbjct 306273 T-ATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCT 306331 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| |||||| || || ||||||||| Sbjct 306332 TGCCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | ||| || || ||||| ||||| || |||||||| |||||||| ||||| | Sbjct 306363 TCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGA 306422 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || ||||| || || ||| | || | | ||| || || ||||| Sbjct 306423 CAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGG 306482 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || ||||| || |||||||| ||| || | |||| ||||| || | || | Sbjct 306483 AATACCTTCCTTGTCCTG-AATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCA 306541 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | ||||| || || || || || || || || || || ||||| Sbjct 306542 CTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||||||||| || || || || |||||||| || |||| | || | ||| Sbjct 305922 CAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATC 305981 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || ||||| || ||| | |||| || || || || || || || || ||||| || Sbjct 305982 TTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC 306041 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | || ||| | || | || ||||| | |||||||| || || || | Sbjct 306042 TTG-AATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGG 306100 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || | |||||| ||||| || ||||| Sbjct 306101 TTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| ||||| || |||| |||||||| ||||| || || ||||| ||||| | Sbjct 306592 CCACCCCGTAAACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGAC 306651 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || || |||||||| | |||| | || ||||| || ||| Sbjct 306652 AACGTTCTGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGA 306711 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| || || |||| | || || || | || || Sbjct 306712 ATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACC 306771 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| ||||| || ||||| | ||||| || || ||||||||||| Sbjct 306772 TCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTGCATTTT 306821 >seq1 Length=9216672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||||||| || || ||||| || || | | || | || || ||||| Sbjct 4066166 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTG 4066225 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 |||||| || | || | || ||||| || || || || ||||| |||||||| ||| | Sbjct 4066226 TTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG-AATCT 4066284 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 ||| || ||| |||| | |||||| ||| || ||||| || || || || || || | Sbjct 4066285 TTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTG 4066344 Query 29762 TTAAGGTTTTAACAAATATCTGCAT 29786 | | ||| || || || |||||||| Sbjct 4066345 TGAGGGTCTTGACGAAAATCTGCAT 4066369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385205763313542