Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 214 1e-49 >seq1 Length=9216672 Score = 214 bits (236), Expect = 1e-49 Identities = 929/1456 (64%), Gaps = 34/1456 (2%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || ||||| || |||| ||||| | | ||| || || || ||||| ||||| || ||| Sbjct 4691772 GTGGATTTGTCCTCGGCTGTCACGCTCATAATGCCGTTTGCGTCCAAGTCAAACGTAACT 4691831 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||||| || || || || | | || || ||||| || |||| | ||| | |||| | Sbjct 4691832 TCAATCTGCGGAACTCCCCGGGGGGCGGGAGGGATGCCATCCAGGTGGAATTTACCCAAA 4691891 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || ||||| || | | |||||||| ||||| | || || || | | Sbjct 4691892 AGATTGTTGTCTTTCGTCAGTGGACGTTCACCTTCGAAGACCTGAATGAGCACCCCGGGC 4691951 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 |||||||| || || || ||||| | | || || || ||| || || || || | | Sbjct 4691952 TGATTATCAGAGTACGTCGTAAAGATTTGCGACTTCTTTGTAGGGATCGTCGTATTCCGA 4692011 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 ||||| | ||||| | ||||| || ||||||| || || ||||| || | ||| Sbjct 4692012 GGAATAAGTGTAGTCATGACGCCACCGGCAGTTTCTAGTCCGAGGGAAAGTGGCGCCACA 4692071 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770 || | |||| | | || | || || ||| | |||||| ||||| Sbjct 4692072 TCGAGGAGGAGCAACTGCTGTACTTGAGAGCTGGTGACACCCTTGATAATAGCGGCTTGC 4692131 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | ||||| ||||| || || |||||||| || || | | ||| |||||| Sbjct 4692132 ACTGCAGCGCCATACGCGACGGCTTCATCGGGGTTGATGGACCGGCAGGGTTCTTTACCG 4692191 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 281890 ||||| || | | || | ||| | || ||||| | | || || || || | | Sbjct 4692192 TTGAAGAATTCGGTAATGAATTGCTGGATTTTCGGAATTCTCGTGGACCCCCCGACCAGT 4692251 Query 281891 ACAATTTCATGCACCTGTGATTTATCCAGTTTT-GAATCCAATAAAACTTTTTCAACGGG 281949 |||| ||| || || | | |||| | || || || || || || || Sbjct 4692252 ACAACTTCGCTTAC-TGAGCGCTTGTCAGTACCAGCGTCTTTCAACACCTTCTCGACCGG 4692310 Query 281950 TTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008 || || | || | || |||| ||||||||||| || || | || ||| Sbjct 4692311 GTCCAG-CGAGTGACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGTGCGC--GTGAGAT 4692367 Query 282009 TGA--CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 282066 || || || ||||| |||||| ||| || || | |||||| || | || || Sbjct 4692368 GGAAACAGAGTAGTCAATACCTTCGTACAGCGAGTCGATTTCAATGGTCGCCTGCGTGCT 4692427 Query 282067 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA-----GGCT 282121 | || || | || || || ||||| || |||| || | || | |||| Sbjct 4692428 ACTGGAAAGGGTGCGCTTCGCGCGTTCGCACTGAGTCCGGAGACGACGCAGAGCACGGCT 4692487 Query 282122 TTT---GCTGAT-TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCA 282177 || |||||| | ||| |||||| | |||||||||| || | ||||| | Sbjct 4692488 GTTCGAGCTGATGTCCTTCCC-TCTGTTCT-----TTCTCTTGAAGTCCTGCACACAGAA 4692541 Query 282178 TGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCT 282237 || || ||||| || || || || ||||| || | || | |||| ||| || | Sbjct 4692542 GTCCACCAGGCGATTGTCGAAGTCCTCGCCTCCTAAATGCGTGTCGCCTGCCGTTGCCCG 4692601 Query 282238 TACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCAT 282297 || | ||||| || ||||||| | ||| |||| || ||| ||| ||||||||||| Sbjct 4692602 CACCTCGAAAATGCCGTCTTCAATCGTCAAGAGAGAGACGTCAAAGGTGCCACCACCCAT 4692661 Query 282298 ATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 282357 ||| ||||| | ||| |||| ||| | || || ||||||||||||| || Sbjct 4692662 ATCGAAAATCAACACAATCATCTCTCCACACCCGCGCTTGTCCAGACCATACGCAATTGC 4692721 Query 282358 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 282417 ||| |||||||| || || ||||||| | || || | ||| ||||| | || ||||| Sbjct 4692722 AGCTGCAGTTGGCTCGTTGATAATTCGAAGTACGTTCAAACCTGCAATCGTGCCAGCATC 4692781 Query 282418 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGT 282477 ||| |||||||| | || ||||| || ||||| || || || || ||||| || ||| | Sbjct 4692782 TTTTGTGGCTTGGCGCTGAGAATCATTGAAATACGCGGGCACCGTGATAACCGCTTCTTT 4692841 Query 282478 TACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 ||| |||| |||| | ||| |||||| || | | | ||| | || Sbjct 4692842 CACTGGGCGACCAAGGTAAGATTCCGAAATTTCTTTCATCTTGCCCAGCACCATCGCAGA 4692901 Query 282538 AATTTGTTC----TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATG 282593 ||| | || |||| || || || | || ||| || ||||| | || Sbjct 4692902 AATCTCCTCAGGGTGGA-AACAT---TTCGTCTCTCCTTGGTAATGCACTTCGATTAGTG 4692957 Query 282594 GTTTATTACC---AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACAC 282650 | || ||| || || ||||| || ||||| | |||||| || ||||| || Sbjct 4692958 GCTTGCCACCTTTGCCAGCGATGACTTTGAACGGCCAGTGTTTCATGTCAGATTGCACCG 4693017 Query 282651 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 282710 |||||| || | | ||||| | ||||||||||| ||||| ||||| || | Sbjct 4693018 AGGGGTCATCGAACTTGCGGCCAATCAGGCGTTTTGCATCGAAAATCGTATTCTCCGGGT 4693077 Query 282711 TAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 282770 | || |||| | ||| || ||||| |||| || |||| || || ||||| | | Sbjct 4693078 TGCGCGCCACTTGGTTTTTCGCGGCATCCCCAACAAGTCGTTCCGTGTCGGTAAACGCCA 4693137 Query 282771 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 282830 | || || || || ||||| || || ||||| |||||||| ||||| || | |||||| Sbjct 4693138 CGTACGACGGCGTAGTGCGGTTGCCCTGATCGTTCGCAATGATTTCCACCGTGTCATTTT 4693197 Query 282831 GCCATACACCTACACA 282846 ||| ||||| || || Sbjct 4693198 TCCACACACCAACGCA 4693213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740489887894812