Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq50 179 7e-40 seq1 150 4e-31 seq32 111 3e-19 >seq50 Length=657131 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| || || || ||||| || || ||||||||||| || || ||||| || Sbjct 306364 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 306423 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| ||||| || ||||| ||||| ||||| || || | |||||| ||||| || Sbjct 306424 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 306483 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||| |||||||| || || || ||||| || || || ||| Sbjct 306484 ATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACT 306543 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||||||||| || ||||||||||| || || || ||||| Sbjct 306544 TCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| || | || || || || |||||||| || ||||| || || || || || Sbjct 305907 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 305966 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || ||||| || ||||| || |||||||| || || ||||| || ||||| Sbjct 305967 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 306026 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || || || ||||| || ||||||||| || ||||| Sbjct 306027 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 306086 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || || || ||||| | || || ||||| || ||||| Sbjct 306087 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 113 bits (124), Expect = 9e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| || || ||||| ||||| || || || ||||||| |||| || || || Sbjct 306154 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATCC 306213 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| |||||||| ||||| | | || ||||| || || || ||||| || ||||| Sbjct 306214 AGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGT 306273 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || | || || || || | |||||| || || || || | || ||||||||| Sbjct 306274 ATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCTTG 306333 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || | || || || || ||||||||| Sbjct 306334 CCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 >seq1 Length=9216672 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| || || || || || ||| |||| |||||||| |||||| Sbjct 4066167 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTGT 4066226 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || || || || || || || || || ||||| |||||||||||| Sbjct 4066227 TTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTTT 4066286 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| || || || || ||||||| || || ||||| ||||| Sbjct 4066287 GCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGTG 4066346 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 4066347 AGGGTCTTGACGAAAATCTGCAT 4066369 >seq32 Length=1241728 Score = 111 bits (122), Expect = 3e-19 Identities = 206/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 |||||| || || || ||||| | |||||||||||| |||| ||| | || || Sbjct 911928 CTCGAAGCAGCAGAGACGTATGACGCGCTATGGAATGCAGCGCAGCAGCAGCTAATGAGG 911869 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 |||||||| ||||| | | | | | ||||||||||| || ||||| || || |||| Sbjct 911868 GAAGGAAAGATGCACGGCTATCTGCGTATGTACTGGGCGAAGAAGATGCTGGAGTGGATG 911809 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | | | || | || || ||| | | ||| || | || |||| ||| || || Sbjct 911808 AAATCGCCTGCTGAGGCACTTGCGGGA-GCTATACATTTGAATGATAAATACAGCCTGGA 911750 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGAT-TACATGATC 198549 ||| |||||||| ||||| ||||| || || |||||||| | | |||| | | || || | Sbjct 911749 CGGGACGGATCCCAACGGTTACGTCGGATGCATGTGGTCGA-TCGCGGCTCTGCACGACC 911691 Query 198550 GAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTT 198606 | | | ||| ||||| |||| ||||||| | || |||||||| || | |||| Sbjct 911690 AGCCTTTCAGAGAGAGACCCATATATGGGAAGGTTAGGTATATGAACTACGCTGGTT 911634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981791197010218