Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq50 107 2e-18 seq54 87.8 2e-12 >seq1 Length=9216672 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| | || ||| || || || Sbjct 4066166 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTG 4066225 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| ||| | ||||||| |||||||||||| ||||| || |||||||| ||||| Sbjct 4066226 TTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTT 4066285 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | |||| ||||||| | ||| || || | ||||| ||| || || || Sbjct 4066286 TGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGT 4066345 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 4066346 GAGGGTCTTGACGAAAATCTGCAT 4066369 >seq50 Length=657131 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||||||| || ||| || || ||||||||||| Sbjct 306622 GTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCTTCCAGCTGCTTGCCA 306681 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||| || ||||| || || ||||||||||| ||| || ||| Sbjct 306682 GCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTC 306741 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||| |||| ||||||||| || | |||| || || || ||||| ||| Sbjct 306742 ACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTT 306801 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 306802 TTCACGAAGATCTGCAT 306818 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || ||||||||| || ||| |||||| || ||||| || Sbjct 306394 GTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCT 306453 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || |||| || || || ||||| || || || ||||||||||| ||| |||||| || Sbjct 306454 GCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTC-CTGAATTTTTGCTTT 306512 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | |||||| | |||||||| || | || | || || ||||||| || Sbjct 306513 CACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAACGTTATCGTCTTCCCGGTCAACGT 306572 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||||||| |||||| Sbjct 306573 CTTCACGAAAATTTGCATG 306591 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | || ||||| ||||| || ||||| || | || ||| | || || | Sbjct 305929 AAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTC--CGATAGTGTTCTGCCATCTTCCA 305986 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | || |||| ||| ||||| |||||||||||||| || || ||| Sbjct 305987 GCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC-TTGA 306045 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||| | | ||| | ||| || | ||||| || || | |||| |||||| Sbjct 306046 ATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTT 306105 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || ||||| ||||| Sbjct 306106 CCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 >seq54 Length=544971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 148836 TTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTG 148895 ||||| || ||| |||||| | | |||||| || || || | || | |||||| Sbjct 190737 TTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTACATAAATTGCTA 190796 Query 148896 CATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGC 148955 | |||||| ||| | |||||| || |||||||| || ||||| ||||||||||||| | Sbjct 190797 CCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTACATC 190856 Query 148956 ATGTACGG 148963 |||||||| Sbjct 190857 ATGTACGG 190864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403505620880