Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq50 104 2e-17 >seq50 Length=657131 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||||||||| || || || || || || |||||||| || || | ||| | | | Sbjct 306148 CGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA 306207 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||| ||||| || || ||||||||||||||||| | || | ||||||||| Sbjct 306208 TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTG 306267 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| || | || | || || || || | ||||| || | ||| || Sbjct 306268 TCTTGTATTTTC-GTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAAT 306326 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || |||| ||||| || || |||||||| Sbjct 306327 CGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || | ||| || | ||||| || || || ||||| || ||| Sbjct 306352 AAAATCTGCATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATG 306411 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||||||||| | || | | |||| |||| ||| ||||| |||||||| | ||| || Sbjct 306412 TTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGT 306471 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| |||| | |||||| ||||| |||||| || || || | || | ||||| Sbjct 306472 TGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTT-TGCTTTCACGTTCTCTATCGTGTC 306530 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || | ||| ||||| || || || ||||| || || || || ||||| Sbjct 306531 CGACGGCTCCACTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Score = 89.7 bits (98), Expect = 3e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 |||| | ||||||||| || | ||||||||||| ||||| ||| || || ||||| Sbjct 305898 AAAAGCCGCACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTT 305957 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||| || || ||||| | | || |||| ||||| || ||||| |||| | ||| || Sbjct 305958 GTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTG 306017 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | |||||||| || |||||| ||| |||| || | || || Sbjct 306018 GTCAGGAGGGATGCCTTCTTTATCTTGAATTTTAGCCTTC-ACATTCTCGATCGTATCAG 306076 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 306077 ACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692534599040