Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq50 120 7e-22 seq1 111 4e-19 >seq50 Length=657131 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||||||||| ||||| || || || ||||| Sbjct 306803 AAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTCCGATACGATCGAAAAC 306744 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || || || | || |||||| Sbjct 306743 GTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCAACAGCGTCTGATCTTC 306684 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| || || ||| ||||||||||| ||||||| || ||| Sbjct 306683 GCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGATTACAACATCCAGAAGGAATCT 306624 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 306623 ACGCTTCACCTGGT 306610 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || ||||| || ||||||||||| || ||||| | || Sbjct 306575 AAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCGGACACGATAGAGAAC 306516 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| ||||| || || ||||| ||| ||| ||| ||| | ||||| || Sbjct 306515 GTGAAAGCAAAA-ATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTT 306457 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| |||| || ||||| || ||| ||||||||||| | |||||||| || Sbjct 306456 TGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATC 306397 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 306396 AACACTTCAC 306387 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| ||||| | ||||| || ||||| || |||| Sbjct 306119 AAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCTGATACGATCGAGAAT 306060 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| || || ||| || || || ||||| Sbjct 306059 GTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAACAGAGGCTGATCTTT 306000 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| || || | | || |||||| | ||||| |||||| Sbjct 305999 GCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAACATTCAGAAGGAGTCT 305940 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| | || |||||| | ||| Sbjct 305939 ACTCTTCATTTGGTGTTGAGATTACGA 305913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || |||||||| ||||| || ||||||| || || || | ||| || || ||||||||| Sbjct 306610 ACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCTTCC 306669 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| || || |||||| Sbjct 306670 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGA 306702 >seq1 Length=9216672 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || || ||||| ||||||| || ||| ||| Sbjct 4066366 CAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCCGAC 4066307 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||||||| || || || || || ||| || Sbjct 4066306 ACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAGCAG 4066247 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| || || ||||||| || || ||| | |||| |||||| || Sbjct 4066246 AGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAACATC 4066187 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||| || || Sbjct 4066186 CAGAAGGAATCCACCCTTCATCTCGT 4066161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181777463369902