Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq50 114 1e-20 >seq50 Length=657131 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGT 131961 || || | ||| |||||||| | | ||||| || |||||||||||||| | | || | Sbjct 305914 CGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTT 305973 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || | ||||| |||||||| || | | |||| || | |||||| || ||||| ||||| Sbjct 305974 CTGCCA-TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCC 306032 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| |||||| |||| | || | ||||| | |||||| ||||| | Sbjct 306033 TTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAG 306092 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || ||||| | ||||| ||||| Sbjct 306093 TGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 105 bits (116), Expect = 6e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||||| || || ||||| || | | | || || || |||||||||||||| | | ||| Sbjct 306141 ACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGT 306200 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | | | || || || || || || | |||| | |||||| ||||| || || || | Sbjct 306201 TCTTCCA-TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCC 306259 Query 132021 CTTCTTTATCG-GTAATTTTTTGT-TTCAACTGTTCCACAGTATCGGTCGGCTCCACTTC 132078 ||||||| || ||| |||| || |||| | || || ||||| | ||||||||| || Sbjct 306260 CTTCTTTGTCTTGTA--TTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTC 306317 Query 132079 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||| | ||| || ||||| || ||||| | |||||||||||| Sbjct 306318 TAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 306362 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||| || | |||| ||||| ||||||||||| ||| || || Sbjct 306369 ACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGT 306428 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | || || || || || || | | | || ||||| ||||| ||||| || || || Sbjct 306429 TCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACC 306488 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||||| ||||| | || | || || | |||||||||||| | Sbjct 306489 TTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAA 306548 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||| || || | |||||| |||||| Sbjct 306549 CGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCATG 306591 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| || || | |||||| ||||| || || | Sbjct 306625 GATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCTTCCAGCTGCTTGCCAGCG 306684 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| || || || ||||| || || ||||| |||| Sbjct 306685 AAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACG 306744 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||||| |||||||| || | || | || || |||||||| ||||| Sbjct 306745 TTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTC 306804 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 306805 ACGAAGATCTGCAT 306818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594149234320