Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq50 114 1e-20 >seq50 Length=657131 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| ||||| | | |||| || | |||| ||||| || ||||||||||||| | Sbjct 306592 CCACCCCGTAAACGAAGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGAC 306651 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || ||||||||||| || || || |||| ||||| || || | ||| Sbjct 306652 AACGTTCTGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGA 306711 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||| || ||||| || | | ||| ||| | |||||| Sbjct 306712 ATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACC 306771 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| ||||| || || || |||| |||||||| || ||||||||| Sbjct 306772 TCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTGCATT 306819 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| ||||| |||||||||||||| | ||| |||||| ||||||||||| || | Sbjct 305908 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 305967 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||||||| || || ||||| |||| || ||| ||||| | ||| Sbjct 305968 AGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGG 306027 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || ||| | ||| ||| | ||||| | | | | ||| || || || || Sbjct 306028 ATGC-CTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 306086 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | ||||||||||| || ||||| Sbjct 306087 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| || | | ||||| || | || || || |||||||||||||||| Sbjct 306362 TTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGG 306421 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| |||| |||| ||||| ||||| || ||||| || | || || ||||| | | Sbjct 306422 ACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCG 306481 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||||||||| ||| |||||| |||| | | | |||||| || ||| Sbjct 306482 GAATACCTTCCTTGTCC-TGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCC 306540 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||| ||||| || || ||||| || ||||| || || ||||| Sbjct 306541 ACTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 |||||||| || | || ||||| ||||||||||| || | || |||| | || Sbjct 306151 AACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCA 306210 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 ||||| ||||| || || || ||||| |||||||| || | |||| | || ||||| Sbjct 306211 TCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCT 306270 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 || || ||||| | | ||||| || || |||||||| | ||| ||||| Sbjct 306271 TGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTC 306330 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || | |||||||| || |||||||||| Sbjct 306331 TTGCCAGTTAGGGTTTTCACGAAAATCTGCATTC 306364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777472858960