Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq54 129 8e-25 >seq54 Length=544971 Score = 129 bits (142), Expect = 8e-25 Identities = 398/609 (65%), Gaps = 20/609 (3%) Strand=Plus/Minus Query 68983 GCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTG 69042 || || || || || || || |||||| |||| || || |||||| || |||||||| Sbjct 228352 GCAAGCTCGCAGCTAGCTTCCAATGCAGCGTAGTATATGCATTCGAATATATTCTTATTT 228293 Query 69043 AGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 | ||| || || | ||||||||| || || | | || || || || || ||||| Sbjct 228292 AACACTTTGGCATCCACACTATCGAAGGGGTAGCGCATCAGCATGAAGGCGTCGGCCAAA 228233 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAAT 69161 || || || || || || || || | ||||| | | || | ||| | || || ||||| Sbjct 228232 CCTTGGACACCTATTCCTATCGGGCGATGTCGCATGTT-GCTCTTCCGTGCCTCAGGAAT 228174 Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTC 69221 ||| || | ||| | || || || ||| |||||||| | || || ||||| Sbjct 228173 AGGGTAGTGATTTCTGTCGATGATGCGATTCAGATTTCGTGTCATGACCTTTACCACCGA 228114 Query 69222 CTTTAGTTTGAGAAAATCAAAT--CGTCCATCTATA----ACAAACATATTCAGTGCTAC 69275 ||| || || | ||| |||| | | | |||| |||||| | || | || Sbjct 228113 CTTCAGCTTCTCATAATTAAATGACTTTCTTCTAGGCTCCACAAACTTGGGAAGCGAAAC 228054 Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC----ATATTGTATTATCTCTG 69331 || || || ||||| || || || || | | ||| | | | | | || | Sbjct 228053 TGACGCAAGGTTACACACAGCGACTTCGTC----TCTGCCAGTAAACTCGACCACTTCGG 227998 Query 69332 TACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGG 69391 | ||||| || | ||||| || ||||||||||| | ||| || ||||| || || || | Sbjct 227997 TGCATAGGTTGCCGCATTTTATCGTCCCCAGATTCTTCTGGTTGCTCTTCTTATTGCAAG 227938 Query 69392 CGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCC 69451 |||| ||||| | ||| ||||||| || ||||| ||||||| || | || | || Sbjct 227937 CGTCTTTGTACATCATATACGGAGTGCCTGTTTCTATCTGAGCTTGCAATATCGCAAACC 227878 Query 69452 AAACGACCCTAGCATTTATTACGGTCTTGTAACG--CTTCTCTTTTTCATATTGTGTATA 69509 | | | | |||| |||| || || ||| |||| ||| || | ||||| Sbjct 227877 ACAGGTACTGAGCAGGTATTGTTTTCCTGCCACGTCCTTCCATTTCGTATTTCTCGTATA 227818 Query 69510 TAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACAT 69569 |||| | ||| || || ||||| || || ||| || ||||| |||||||||||||| Sbjct 227817 AAGCC--TTGAAATCGTCACCCCAGACCTCCGTCAAACCCGGACACTCATTTGGACACAT 227760 Query 69570 CAATGACCA 69578 || | ||| Sbjct 227759 TAAGGTCCA 227751 Score = 104 bits (114), Expect = 3e-17 Identities = 304/463 (66%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 |||| || || || |||||||| | ||| |||| || | ||||||||| || |||| Sbjct 190426 CAGCGAGCTCGCAGCTTGCCTCGAGGGCAGCGTAGTATACGCATTCGAAAATGTTTTTAT 190485 Query 69041 TGAGATCTTGTG-CTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 | | |||| || ||||| | || ||||| ||||| | | | || || || ||||| Sbjct 190486 TTA-ATCTCCTGGCTTCTGGGCTGTCGAAGGGATACCGCAGCATCATGAACGCGTCTGCG 190544 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 | || ||||| || | ||||| || | || ||| || || ||||| || Sbjct 190545 AGACCTTGAACACCCAGCCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCGCTTCAGGG 190604 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 ||||| || || || | || || | ||| ||||| || | ||||| || || Sbjct 190605 ATAGGGTAGTAGTTCCTGTCGATCACGCGATTCAGATTGCGTGTCGCGACTTTGACAACA 190664 Query 69220 TCCTTTAGTTTGA-GAAAATCAAA----TCGTCCATCTAT-AACAAACATATTCAGTGCT 69273 | ||||||||| | || | ||| |||| | || |||| || | || | Sbjct 190665 GCTTTTAGTTTGTCGTAATTGAAAGTCTTCGTTTCCCGATCAACATACTTCGGAAGGGAC 190724 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | ||| || | || || || || || |||| | || || | | || |||||| Sbjct 190725 AGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTA 190784 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 |||| ||| |||| |||||| || || || || | ||| || |||||| | || |||||| Sbjct 190785 CATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCG 190844 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||||||| | || |||| || || || || ||||||| || Sbjct 190845 TCCTTGTACATCATGTACGGCGTCCCTGTCTCGATCTGAGCTT 190887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686884225837680