Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq54 134 2e-26 >seq54 Length=544971 Score = 134 bits (148), Expect = 2e-26 Identities = 241/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || ||||||||||||||||||| || || || | ||| | || ||| | | ||||| Sbjct 190539 TCTGCGAGACCTTGAACACCCAGCCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCGCT 190598 Query 111113 GTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 ||| | || || | || ||||| || || || || ||||| || | | | Sbjct 190599 ---TCAGGGATAGGGTAGTAGTTCCTGTCGATCACGCGATTCAGATTGCGTGTCGCGA-C 190654 Query 111170 TTTGTGATTT-CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 |||| | | | ||||| || |||| ||||| || || || |||||||| Sbjct 190655 TTTGACAACAGCTTTTAGTTTGTCGTAATTGAAAGTCTTCGTTTCCCGATCAACATACTT 190714 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||||||| | || ||||| ||||| |||||| |||||||| | |||||| | Sbjct 190715 CGGAAGGGACAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAAC 190774 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 ||||||||||||||| ||| || || || || || | ||||| ||||| ||||| | Sbjct 190775 AATTTCTGTACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCT 190834 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||||| || |||||||| | |||||| |||||||| ||||| |||| Sbjct 190835 ATTGCAGGCGTCCTTGTACATCATGTACGGCGTCCCTGTCTCGATCTG 190882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628009532155200