Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 293 7e-74 seq50 205 3e-47 seq5 87.8 5e-12 >seq1 Length=9216672 Score = 293 bits (324), Expect = 7e-74 Identities = 974/1499 (65%), Gaps = 27/1499 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || || | || || || || || || |||| ||| ||| ||||||| Sbjct 4693246 GCTGTGGGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACG 4693187 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || ||||| || ||| | || ||||| || ||||| || |||||| Sbjct 4693186 GTGGAAATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACC 4693127 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || | |||| ||| | || ||||| |||| || || || | ||| Sbjct 4693126 GACACGGAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAAT 4693067 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 ||| |||| ||||| || || || ||||| | | || |||| || |||||| Sbjct 4693066 ACGATTTTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCT 4693007 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | ||||| | || || | || | | | |||| || ||| | || || Sbjct 4693006 GACATGAAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGTGGCAAGCCACTAATCGAA 4692947 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556 || | || |||| || || ||| ||| |||| || || ||||| | ||||| Sbjct 4692946 GTGCATTACCAAGGAGAGACGAAATG--TTTCCACCCTGAGGAGATTTCTGCGATGGTGC 4692889 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | | || ||||| |||||| | ||| | || | ||| |||| | || || |||| Sbjct 4692888 TGGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGTTA 4692829 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || || ||||| |||||| | ||||| || |||||||||||||||| | Sbjct 4692828 TCACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCACGA 4692769 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || || || || || |||| || || || || ||||| || |||||||| |||| Sbjct 4692768 TTGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGTATG 4692709 Query 349737 GGCTTGATAAAAT-GAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 | || || || | ||| | || | | | | | ||||| ||| | |||||||| Sbjct 4692708 GTCTGGACAAGCGCGGGTGTGGA-GAGATGATTGTGTTGATTTTCGATATGGGTGGTGGC 4692650 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || ||||| || || || | || ||||||| || ||||| || || ||||| || Sbjct 4692649 ACCTTTGACGTCTCTCTCTTGACGATTGAAGACGGCATTTTCGAGGTGCGGGCAACGGCA 4692590 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT---TGTT 349912 || || || ||| | || || || || || || ||||| || || | | || ||| Sbjct 4692589 GGCGACACGCATTTAGGAGGCGAGGACTTCGACAATCGCCTGGT---GGACTTCTGTGTG 4692533 Query 349913 AAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATC-CTA------GAGCAAT 349965 | || || ||| | ||| | | || ||| || | | | | | || | Sbjct 4692532 CAGGACTTCAAGAGA-AAGAACAGAGGGAA---GGACATCAGCTCGAACAGCCGTGCTCT 4692477 Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025 |||||| || | ||| ||| ||||| || ||||| || | || || || || | Sbjct 4692476 GCGTCGTCTCCGGACTCAGTGCGAACGCGCGAAGCGCACCCTTTCCAGTAGCACGCAGGC 4692417 Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 | |||||||| || || || || || | || | || | || || |||| || Sbjct 4692416 GACCATTGAAATCGACTCGCTGTACGAAGGTATTGACTACTCTGTTTCCATCTCACGCGC 4692357 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAA-CAATGGATCCTGTGGAAAAAG 350144 || ||||||||| | || ||||| || || || | |||| || || || || | Sbjct 4692356 ACGTTTTGAAGAACTTTGCATGGA-CTACTTCCGTCACTCGCTGGACCCGGTCGAGAAGG 4692298 Query 350145 TATTAAAAGATGCAAAAA-TGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 | || ||||| || | || | | |||| | ||||| || | || || || Sbjct 4692297 TGTTGAAAGACGCTGGTACTGACAAGCGCTCAGTAAGC-GAAGTTGTACTGGTCGGGGGG 4692239 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT 350263 || || | ||||| ||| | || || || | | || || || || || |||||||| Sbjct 4692238 TCCACGAGAATTCCGAAAATCCAGCAATTCATTACCGAATTCTTCAACGGTAAAGAACCC 4692179 Query 350264 TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATT 350323 | | || || || || |||||||| || || ||||| ||||| || || || ||||| Sbjct 4692178 TGCCGGTCCATCAACCCCGATGAAGCCGTCGCGTATGGCGCTGCAGTGCAAGCCGCTATT 4692119 Query 350324 TTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTT 350383 | || | || ||| || | | | | | || || ||||| | |||||| Sbjct 4692118 ATCAAGGGTGTCACCAGCTCTCAAGTACAGCAGTTGCTCCTCCTCGATGTGGCGCCACTT 4692059 Query 350384 TCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACT 350443 || || ||| |||||||| | |||| || |||||| ||||||||| | |||| || Sbjct 4692058 TCCCTCGGACTAGAAACTGCCGGTGGCGTCATGACTACACTTATTCCTCGGAATACGACG 4691999 Query 350444 GTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACA 350503 | |||||||| ||||| |||| ||| | || | | ||||||||||| | ||| Sbjct 4691998 ATCCCTACAAAGAAGTCGCAAATCTTTACGACGTACTCTGATAATCAGCCCGGGGTGCTC 4691939 Query 350504 ATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT 350563 ||||| || || |||||||||||| | | || ||||| || ||| | || |||| Sbjct 4691938 ATTCAGGTCTTCGAAGGTGAACGTCCACTGACGAAAGACAACAATCTTTTGGGTAAATTC 4691879 Query 350564 ACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGAT 350623 ||| || || || || || | |||||||| ||||||||||| | || || Sbjct 4691878 CACCTGGATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATTGAAGTTACGTTTGAC 4691819 Query 350624 ATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTAG 350682 | || |||| || ||| | | || || || | || ||||| | || ||||| || Sbjct 4691818 TTGGACGCAAACGGCATTATGAGCGTGACAGCCGAGGACAAATCCACCGGGAAAAGCAG 4691760 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || |||||||| || || || || || || || || || || | |||| || ||||| Sbjct 4066161 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4066220 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 |||||||| || || ||||| || | ||||| || || || || || || || || ||| Sbjct 4066221 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4066280 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || ||||| ||||| | || || | |||||||| || || | ||||| Sbjct 4066281 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4066340 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||||||||| Sbjct 4066341 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4066369 >seq50 Length=657131 Score = 205 bits (226), Expect = 3e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| |||||||| | || | ||||||||||||||| || ||||| || || || || Sbjct 305907 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 305966 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || ||||| |||||||| || ||||| || |||||||| || | || || |||||||| Sbjct 305967 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 306026 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||||||||| ||||||||||| || ||||| || |||| |||||| || || || Sbjct 306027 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 306086 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | || ||||| || || ||||| |||||||| ||||| Sbjct 306087 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 Score = 174 bits (192), Expect = 5e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | || || || | ||||| || || || || ||||| || | Sbjct 306128 TTTGCATCCCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGT 306187 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||||||||||| ||||| || ||||| |||||||| ||||| | ||| ||||||| Sbjct 306188 AGTCAGATAATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGAT 306247 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| |||||||| || || ||||| | || || || || | || ||| || | Sbjct 306248 CAGGTGGAATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACG 306307 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || |||| ||||| || ||||| ||||| || |||||||||||| Sbjct 306308 GCTCCACCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| |||| || || | ||||| || || ||||| ||||| || ||||| Sbjct 306360 CATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATC 306419 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || |||| || || || ||||| ||||| ||||| || |||||||| || || || Sbjct 306420 GGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGG 306479 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||||||||| ||||| || || || |||| || || || || Sbjct 306480 CGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTC 306539 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | || | ||||| ||||| | || || || ||||| ||||| Sbjct 306540 CACTTCCAACGTTATCGTCTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 >seq5 Length=5325513 Score = 87.8 bits (96), Expect = 5e-12 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||| ||||||||| | |||||| ||| |||| ||| ||| || || | Sbjct 40853 AGCACGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGAGAGTCCGC 40912 Query 423823 GTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||||| ||||||||||||| Sbjct 40913 GTGGGTTCAAATCCCACTCCGTGCA 40937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515198836568186