Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 1e-15 seq18 84.2 2e-11 >seq11 Length=3314930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 || || |||| |||||||||||| ||| || || ||| |||| |||||||| Sbjct 2989137 GGTTCAAGGAAGTTGAGGTTGTTACTGCCAACAAATCGCTGGGCCATCGAGACAATCGTC 2989196 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTG--ATACGCCGTCTGCTCCGCGATGTATCCCGCCA 152212 |||||| |||||||| ||||| || || ||| | || |||| || ||| || || | Sbjct 2989197 TGCTGCAGGCTCGCTTCGCCGTGATGGTATGCGCTGACT--TCCGAGACGTAGCCGGCGA 2989254 Query 152213 ACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGC 152272 ||||||||| || || ||| | ||| || || || | || ||| | | ||||||| Sbjct 2989255 GCTGCGCCACTTTGATCTCCTGCTTCATATTTTTTTTTATGCATGCGAAGAGGACCTTGC 2989314 Query 152273 GCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| || ||| | ||||| | || || || || || |||| | |||| Sbjct 2989315 GCTGGCCAGGCTTCCAGCCGTCGATCAGCTGCGGGATGGACCGCTCGGTGTC 2989366 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC 119134 ||||| | ||||| |||||| || ||||| ||||| ||||| ||||||||||| ||| Sbjct 3007892 CTGAAGATGTTGGTTAGCTTCGCGCCGTAGCCGTTGCGACCGCCGGTCACGCGACACTCG 3007951 Query 119135 TCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGA 119186 |||| ||||||| ||| |||| || || || || |||||||| |||| Sbjct 3007952 CTATCGTCGTAGTTGTCGCTCGTCAGCAGCTGGCCGAAAATGAGCTCCGGGA 3008003 >seq18 Length=2649029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||||| |||| |||| ||||||||| ||| ||||||||| || ||||||||| | Sbjct 1490541 TGCTCCCGGTGGGGATCGAACCCACGACTTTCGGCTCATAAGACCGACGCTCTAACCAAC 1490482 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 1490481 TGAGCTACG 1490473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196423347600