Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq50 125 8e-24 seq54 116 4e-21 >seq1 Length=9216672 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || || |||||| | Sbjct 4066369 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4066310 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| ||||||| || ||||| ||||||||||| || || || |||||| Sbjct 4066309 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4066250 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || || ||||| || || | | || || | ||||| || Sbjct 4066249 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4066190 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||||||||| |||||||| || Sbjct 4066189 ATCCAGAAGGAATCCACCCTTCATCTCGT 4066161 >seq50 Length=657131 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || || || || || ||| | | Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||||||||||||||| || || || || || ||||| ||||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| | || ||| | ||||| || Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||||||| | || ||| | | || ||||| Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 305908 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||| | ||||| ||||| || || | || || ||| | Sbjct 306590 ATGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCG 306531 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || ||||||||||||||||| || ||||| |||||||| Sbjct 306530 GACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAA 306471 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||| || |||||||| ||||| | | || | | || || || Sbjct 306470 CAACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAAC 306411 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || ||||| || ||||| Sbjct 306410 ATTCAGAAAGAATCAACACTTCA 306388 >seq54 Length=544971 Score = 116 bits (128), Expect = 4e-21 Identities = 273/403 (68%), Gaps = 18/403 (4%) Strand=Plus/Plus Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 |||| |||||| | | | || |||||||||| |||| || || || ||||| || | Sbjct 190502 TGGGCTGTCGAAGGGATACCGCAGCATCATGAACGCGTCTGCGAGACCTTGAACACCCAG 190561 Query 80748 GGCGATCGGGCGGTGGCGCTTGTTCGATC-GCTCGGCCTCCGGAATTGGGTAAAAGTTAT 80806 ||||||| ||||| | | ||| | || || | || || || ||||| |||| Sbjct 190562 CCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCG-CTTCAGGGATAGGGTAGTAGTTCC 190620 Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCT--- 80863 | ||||| ||||| ||||| |||||||| | || |||| | | ||||| | Sbjct 190621 TGTCGATCACGCGATTCAGATTGCGTGTCGCGACTTTGACAACAGCTTTTAGTTTGTCGT 190680 Query 80864 ----GAAAGTCGAATTGGTTCCCCTTCA-CAAATGCCGGAAGGCTCAGGGACGCCAGATT 80918 ||||||| | | ||||| ||| || | ||||||| ||| ||||||| || Sbjct 190681 AATTGAAAGTCT--TCGTTTCCCGATCAACATACTTCGGAAGGGACAGAGACGCCAAGTT 190738 Query 80919 GCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAA 80976 ||| || ||||| || || || ||| ||| || ||||| || || ||||| | Sbjct 190739 GCAGACAGCCACTTCATCCTTGCTGGCGTA--CTCAACAATTTCTGTACATAAATTGCTA 190796 Query 80977 GACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCAC 81036 || || || || ||||| |||||||| ||| ||||| ||||||||||| | Sbjct 190797 CCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTACATC 190856 Query 81037 ATGTACGGGGTACCGGTCTCGACCTGTGACTTG-AGGATGGCG 81078 |||||||| || || ||||||| ||| | |||| | |||||| Sbjct 190857 ATGTACGGCGTCCCTGTCTCGATCTGAG-CTTGTAATATGGCG 190898 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| || ||||| |||| || ||||| || || | |||||||||| | |||||| Sbjct 229168 CGCGTTCGAAGATAATACAAACCTGTCTTTAGTCCACGCCTCCAGCCGTAGAAGTGCATT 229109 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 ||| | ||||| || |||||||| ||||| |||||| || |||||||||||| | Sbjct 229108 GAAGTAAGCTTGGCGTACGTGGGGTTGACCATGTGGATGTTAAGCGACTGAGACTGATCG 229049 Query 80155 ATGAA 80159 || || Sbjct 229048 ATAAA 229044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570289997145440