Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq50 116 2e-21 seq1 89.7 3e-13 >seq50 Length=657131 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || || || |||||||| ||||| || | |||| |||| || Sbjct 306382 ACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCCTCC 306441 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || || ||||| || | ||| |||||||| ||||| | || |||||||| || Sbjct 306442 AGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCC-TG 306500 Query 34618 ATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| ||| ||| | || ||||| ||||||||||| |||||||| || Sbjct 306501 AATTTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAACGTTATCGTCTT 306560 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| ||||| ||||| ||||| |||||| Sbjct 306561 CCCGGTCAACGTCTTCACGAAAATTTGCATG 306591 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||||||||| ||||| |||||| |||||||| || || || ||||||| | || Sbjct 305922 CAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATC 305981 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| || ||||| || ||||| || | | ||||||||| || || | || || || || Sbjct 305982 TTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC 306041 Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | ||| ||| | || || | || || || ||| ||||| | || || | Sbjct 306042 T-TGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGG 306100 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || | |||||||||||||| ||||| Sbjct 306101 TTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 306134 >seq1 Length=9216672 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| ||||| || ||||| || || || || |||| ||||||| ||||| Sbjct 4066166 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTG 4066225 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||||| || || | | ||| ||||| || || | |||||||||||| ||||| Sbjct 4066226 TTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTT 4066285 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || | | ||| ||||| ||| ||||||| ||| || || || || || Sbjct 4066286 TGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGT 4066345 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||||||||| Sbjct 4066346 GAGGGTCTTGACGAAAATCTGCAT 4066369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718622034846