Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq50 158 1e-33 seq1 116 3e-21 seq32 113 4e-20 >seq50 Length=657131 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| || ||| |||| ||| | || ||||| || ||| Sbjct 306818 ATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTCC 306759 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || ||||| |||||||| ||||| || |||||||||||| Sbjct 306758 GATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCAA 306699 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||| ||||| || ||||||| | || |||| ||||||||||| Sbjct 306698 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCA-GAACGTTGTCCGATTACAA 306640 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | || |||| | ||||| ||||||||||| Sbjct 306639 CATCCAGAAGGAATCTACGCTTCACCTGGTCCTTCGTTTACGGGGTGGCAT 306589 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || |||||| | ||||| || || ||||| ||||| Sbjct 306362 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 306303 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || | |||| || || ||||| |||||||||||||| || ||||| ||||| Sbjct 306302 GATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCAG 306243 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || ||| |||| || | || | || || |||||| Sbjct 306242 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAAC 306183 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| |||||| | || ||||| || || |||| || || || Sbjct 306182 ATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGGGAT 306133 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||||| ||| | || || | |||||||| ||||| Sbjct 306591 CATGCAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTC 306532 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || ||| ||||||||| ||||| ||||| || || || || || Sbjct 306531 GGACACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCA 306472 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||| ||| | || | || || || ||| |||| ||| | || |||| |||||||||| Sbjct 306471 ACAACGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAA-GAACGTTGTCCGATTACA 306413 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| || || || || | || ||||| | || ||||| || || || Sbjct 306412 ACATTCAGAAAGAATCAACACTTCACTTGGTACTTCGATTGCGTGGAGGAAT 306361 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | || || || ||||| || ||||| Sbjct 306134 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 306075 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || ||||||||||| ||||||||||| || || || ||| Sbjct 306074 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 306015 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| | || | || || |||||| Sbjct 306014 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 305955 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | |||||||| ||| | || || ||||| Sbjct 305954 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 305908 >seq1 Length=9216672 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || ||||| || | ||| Sbjct 4066369 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4066310 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| ||||||||||| || || || || ||||| || Sbjct 4066309 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4066250 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||||| |||||||| | || | ||||| |||||| Sbjct 4066249 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4066190 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 || || ||||| || ||| | ||| Sbjct 4066189 ATCCAGAAGGAATCCACCCTTCAT 4066166 >seq32 Length=1241728 Score = 113 bits (124), Expect = 4e-20 Identities = 211/305 (69%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 135460 GACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCA 135519 |||| ||||| || | ||||| || || || | |||||| | | | ||||| || ||||| Sbjct 911914 GACGTATGACGCGCTATGGAATGCAGCGCAGCAGCAGCTAATGAGGGAAGGAAAGATGCA 911855 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 ||| | | |||| ||||| ||||| || ||||| |||| ||| ||||||||| || Sbjct 911854 CGGCTATCTGCGTATGTACTGGGCGAAGAAGATGCTGGAGTGGATGAAATCGCCTGCTGA 911795 Query 135580 GGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGG-ACGCGATTCAA 135638 ||| || || ||| ||| |||||| | ||||| | || || ||| ||| | | Sbjct 911794 GGCACTTGCGGGAGCTATACATTTGAATGATAAATACAGCCTGGACGGGACG-GATCCCA 911736 Query 135639 ATGGCTACGTAGGTTGTATGTGGTCTATTTGCGG-TGTACACGATCAAGGATGGAAGGAG 135697 | || ||||| || || |||||||| || |||| | | ||||| || | | ||| Sbjct 911735 ACGGTTACGTCGGATGCATGTGGTCGATC-GCGGCTCTGCACGACCAGCCTTTCAGAGAG 911677 Query 135698 CGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAAT 135757 | | | ||| ||| || | ||||||||||| | ||||| ||| || || ||| Sbjct 911676 AGACCCATATATGGGAAGGTTAGGTATATGAACTACGCTGGTTGCCAAAGGAAGTTCAAT 911617 Query 135758 GTAAA 135762 ||||| Sbjct 911616 GTAAA 911612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434902840794240